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Items tagged with "bioinformatics" (139)

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Blob A Taverna Users Guide

Created: 2008-08-04 17:40:21

Credits: User Paul Fisher User Katy Wolstencroft User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

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Blob LIFEsparks biotechnology network

Created: 2008-10-19 11:05:10 | Last updated: 2008-10-19 11:12:58

Credits: User Suza Adam

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The LIFEsparks biopartnering social forum aims to boost the commercial success of Southern African initiatives and start-up companies focused the life sciences sector (biotechnology and medical devices), vis-a-vis allowing participants to share ideas, knowledge and to present their business and or investment opportunities to potential partners and funders.

File type: JPEG image

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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:20:35 | Last updated: 2008-12-01 07:11:27

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 3. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%203

File type: ZIP archive

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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:18:47 | Last updated: 2008-12-01 07:12:41

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 2. The mashup can be viewed at: http://www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%202

File type: ZIP archive

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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:17:41 | Last updated: 2008-12-01 07:13:40

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 1. The mashup can be viewed at: http://www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%201

File type: ZIP archive

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Blob Popfly Blocks for Protein Characteristics Mashup 1

Created: 2008-11-27 10:11:14 | Last updated: 2008-12-01 07:14:32

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics Mashup 1. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Characteristics%20Mashup%201  

File type: ZIP archive

Comments: 0 | Viewed: 81 times | Downloaded: 49 times

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Blob Popfly Blocks for Protein Prediction Mashup 1

Created: 2008-11-27 10:13:29 | Last updated: 2008-12-01 07:15:28

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Prediction Mashup 1. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Prediction%20Mashup%201  

File type: ZIP archive

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Blob Popfly Blocks for Protein Prediction Mashup 2

Created: 2008-11-27 10:15:10 | Last updated: 2008-12-01 07:16:18

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Prediction Mashup 2. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Prediction%20Mashup%201

File type: ZIP archive

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Blob Protein Analysis Popfly Blocks

Created: 2008-11-27 10:03:04 | Last updated: 2008-12-01 07:17:33

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A zip file containing Popfly blocks for protein analysis. It also includes a file explaining the function of each block as well as a list of mashups in which these blocks have been used.

File type: ZIP archive

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Blob The general plan and guidelines for BioAssist from O...

Created: 2009-10-26 10:15:03

Credits: User Barend

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document has been accepted at the NBIC management team meeting of 22 October 2009, and will serve as ageneral guideline to run the BioAssist program of NBIC. It might be a good idea to read the short document before you contact BioAssist for support in the scope of your 'code' or 'content' interests. Barend Mons

File type: application/x-download

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Blob ProStack Screencast: Segmentation of Images of Gene ...

Created: 2010-05-20 19:48:40

Credits: User Konstantin Kozlov

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

ProStack (Processing of Stacks) is a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. This video demonstrates the workflow for extraction of quantitative information on gene expression from confocal images. ProStack home page: urchin.spbcas.ru/downloads/ProStack/ProStack.htm Download:sourceforge.net/projects/prostack/

File type: AVI video

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Blob BLASTP Analysis Pipeline Script

Created: 2024-12-17 12:23:59 | Last updated: 2024-12-17 12:32:28

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This script processes multiple protein FASTA (.faa) files through BLASTP, comparing them against a specified BLAST database (like nr) to identify species-specific genes.

File type: text/x-python

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Blob Batch Phobius Analysis for Protein Sequences

Created: 2024-12-17 12:26:51

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This Python script automates the process of running Phobius, a tool for predicting signal peptides and transmembrane (TM) domains in protein sequences, on multiple input FASTA files. The script is particularly useful for large-scale bioinformatics projects where analyzing numerous protein datasets is required.

File type: text/x-python

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Blob Batch Predict_Property Analysis for Protein Sequences

Created: 2024-12-17 12:29:43

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This Python script automates the execution of Predict_Property, a tool for analyzing specific properties of protein sequences, on multiple FASTA input files. Predict_Property can be downloaded from this github repository https://github.com/realbigws/Predict_Property. The script is tailored for batch processing of large datasets, ensuring efficient execution and organized output management.

File type: text/x-python

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Blob Meme parser

Created: 2024-12-18 01:11:45 | Last updated: 2025-01-27 08:10:31

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This R script is designed to parse and process MEME motif analysis output files from a directory containing results for different sequence orientations (convergent, divergent, and same) in the context of small open reading frames (sORFs). The script loads necessary libraries, defines functions to parse individual MEME output files (parse_meme_output) and process directories containing these files (process_meme_results). It extracts key information such as motif patterns, widths, number of sit...

File type: Trident (Package)

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