retrieve nucleotide sequence and do a BLAST with options from DDBJ Web services

Created: 2010-07-21 14:21:50 Last updated: 2010-07-21 14:21:52

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informations on Web services available at http://xml.nig.ac.jp/index.html

example

accession : AB000100
database : DDBJ
program : blastn
param : -b 5 -m 7

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Workflow Components

Inputs (4)

Name	Description
bioinformatics_programs
sequence_database
bioinformatics_parameter
DDBJ_accession

Processors (2)

Name	Type	Description
getFASTA_DDBJEntry	arbitrarywsdl	Get DDBJ entry of FASTA Format by Accession Number
searchParam	arbitrarywsdl	Execute Blast with parameter

Beanshells (0)

Outputs (1)

Name	Description
blast_report_ddbj

Links (6)

Source	Sink
getFASTA_DDBJEntry:Result	searchParam:query
bioinformatics_programs	searchParam:program
sequence_database	searchParam:database
bioinformatics_parameter	searchParam:param
DDBJ_accession	getFASTA_DDBJEntry:accession
searchParam:Result	blast_report_ddbj

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Taverna 1

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Lebreton

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Lebreton

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1807 viewings

1672 downloads

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retrieve protein sequence and do a BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: Lebreton

Attributions: BLAST using DDBJ service

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retrieve nucleotide sequence and do a BLAS... (1)

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retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services