BLASTP with simplified results returned

Created: 2007-10-03 18:36:12 Last updated: 2008-03-06 17:01:32

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This workflow Performs a blastp search on protein sequence, extracts sequence id within the blast report and retrives the corresponding seuqences.

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Workflow Components

Inputs (0)

Processors (8)

Name	Type	Description
gi_number	stringconstant
program	stringconstant
query_seq	stringconstant
blast_ddbj	arbitrarywsdl	Execute Blast
database	stringconstant
blastsimplifier	soaplabwsdl	Simplifies BLAST output for later use
Get_Protein_FASTA	local
split_by_newline	local

Beanshells (0)

Outputs (3)

Name	Description
blast_report
simplified_report
sequence

Links (10)

Source	Sink
Get_Protein_FASTA:outputText	sequence
blast_ddbj:Result	blastsimplifier:new_direct_data
blastsimplifier:output	split_by_newline:string
database:value	blast_ddbj:database
gi_number:value	blastsimplifier:gi
program:value	blast_ddbj:program
query_seq:value	blast_ddbj:query
split_by_newline:split	Get_Protein_FASTA:id
blast_ddbj:Result	blast_report
blastsimplifier:output	simplified_report

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Information Workflow Type

Taverna 1

Information Uploader

Franck Tanoh

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Information Version 2 (latest) (of 2)

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Information Statistics

3435 viewings

3180 downloads

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BLASTP with simplified results returned

Created by Franck Tanoh on Wednesday 03 October 2007 18:36:12 (UTC)
BLASTP with simplified results returned

Created by Franck Tanoh on Wednesday 03 October 2007 18:36:12 (UTC)

Last edited by Franck Tanoh on Thursday 06 March 2008 17:01:32 (UTC)

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Comments (2)

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J. Seitz	Wednesday 03 October 2007 18:36:31 (UTC)
	Looks great!

Matt Lee	Wednesday 03 October 2007 18:36:31 (UTC)
	comment

Other workflows that use similar services (50)

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Taverna 1

Uploader

Paul Fisher

BLASTP with simplified results returned (2)

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSV...

Created: 2007-10-03 | Last updated: 2009-12-03

Taverna 1

Uploader

Paul Fisher

BLAST using DDBJ service (2)

Download

Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNIL SRVLARSRKRPAKIYVYINELCTVLKAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLT NTENTASEASRTRGSRRQIQRLEQLLALYVAEIRRLQEKELDLSELDDPDSSYLQEAR LKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERLINKPGLDTFPDY GDVLRAVEKAATRHSLGLP...

Created: 2007-10-03 | Last updated: 2009-12-03