retrieve protein sequence and do a BLAST and extract position from DDBJ Web services

Created: 2010-07-21 13:10:40 Last updated: 2010-07-21 13:10:41

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informations on Web services available at http://xml.nig.ac.jp/index.html

example

accession : Q9NRA8
database : UNIPROT
program : blastp

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Workflow Components

Inputs (3)

Name	Description
sequence_database
bioinformatics_program
UniProt_accession

Processors (3)

Name	Type	Description
getFASTA_UNIPROTEntry	arbitrarywsdl	Get UNIPROT entry of FASTA Format by Accession Number
searchSimple	arbitrarywsdl	Execute Blast
extractPosition	arbitrarywsdl	get position information from BLAST

Beanshells (0)

Outputs (1)

Name	Description
position_blast_report_ddbj

Links (6)

Source	Sink
getFASTA_UNIPROTEntry:Result	searchSimple:query
sequence_database	searchSimple:database
bioinformatics_program	searchSimple:program
UniProt_accession	getFASTA_UNIPROTEntry:accession
searchSimple:Result	extractPosition:result
extractPosition:Result	position_blast_report_ddbj

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Taverna 1

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Lebreton

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Lebreton

Information Attributions (1)

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BLAST using DDBJ service

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retrieve protein sequence and do a BLAST from DDBJ Web services

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1846 downloads

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retrieve protein sequence and do a BLAST and extract position from DDBJ Web services

Created by Lebreton on Wednesday 21 July 2010 13:10:39 (UTC)

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retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: Lebreton

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retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services