GBSeq test

Created: 2008-03-05 14:15:35 Last updated: 2008-03-31 15:55:09

Download Workflow

This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/168/download?version=2
[ More Info Expand ]

Workflow Components

Inputs (0)

Processors (10)

Name	Type	Description
protein_id	stringconstant
Get_Nucleotide_GBSeq_XML	local
nuc_id	stringconstant
Get_Nucleotide_TinySeq_XML	local
Get_Protein_FASTA	local
Get_Protein_GBSeq_XML	local
Get_Nucleotide_FASTA	local
Get_Protein_INSDSeq_XML	local
Get_Nucleotide_INSDSeq_XML	local
Get_Protein_TinySeq_XML	local

Beanshells (0)

Outputs (8)

Name	Description
protein_xml
nuc_xml
nuc_tiny
nuc_fasta
prot_fasta
prot_insd
nuc_insd
prot_tiny

Links (16)

Source	Sink
Get_Nucleotide_FASTA:outputText	nuc_fasta
Get_Nucleotide_INSDSeq_XML:outputText	nuc_insd
Get_Protein_FASTA:outputText	prot_fasta
Get_Protein_INSDSeq_XML:outputText	prot_insd
Get_Protein_TinySeq_XML:outputText	prot_tiny
nuc_id:value	Get_Nucleotide_FASTA:id
nuc_id:value	Get_Nucleotide_INSDSeq_XML:id
protein_id:value	Get_Protein_FASTA:id
protein_id:value	Get_Protein_INSDSeq_XML:id
protein_id:value	Get_Protein_TinySeq_XML:id
Get_Nucleotide_GBSeq_XML:outputText	nuc_xml
Get_Nucleotide_TinySeq_XML:outputText	nuc_tiny
nuc_id:value	Get_Nucleotide_TinySeq_XML:id
Get_Protein_GBSeq_XML:outputText	protein_xml
nuc_id:value	Get_Nucleotide_GBSeq_XML:id
protein_id:value	Get_Protein_GBSeq_XML:id

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Alan Williams

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (1)

(People/Groups)

Franck Tanoh

Information Attributions (0)

(Workflows/Files)

None

Information Tags (9)

Uploader tags

Log in to add Tags

Information Shared with Groups (1)

Taverna 1.7.1 workflow workbench examples

Information Featured In Packs (1)

Taverna 1.7 starter pack

Log in to add to one of your Packs

Information Attributed By (1)

(Workflows/Files)

GBSeq test

Information Favourited By (0)

No one

Information Statistics

4437 viewings

3199 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

GBSeq test

Created by Alan Williams on Wednesday 05 March 2008 14:15:35 (UTC)

Last edited by Alan Williams on Thursday 20 March 2008 09:52:32 (UTC)
GBSeq test

Created by Alan Williams on Wednesday 05 March 2008 14:15:35 (UTC)

Last edited by Alan Williams on Monday 31 March 2008 15:55:09 (UTC)

Revision comment:

This version contains a description

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.