Fetch PDB flatfile from RCSB server

Created: 2008-03-05 14:13:24 Last updated: 2008-03-31 16:01:41

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Given an identifier such as '1crn' fetches the PDB format flatfile and returns the corresponding 3D image of the protein.

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Workflow Components

Inputs (1)

Name	Description
pdbID	PDB identifier such as '1crn'

Processors (5)

Name	Type	Description
RCSBSuffix	stringconstant
RCSBPrefix	stringconstant
FetchPage	local
AddSuffix	local
AddPrefixToID	local

Beanshells (0)

Outputs (1)

Name	Description
pdbFlatFile

Links (6)

Source	Sink
RCSBPrefix:value	AddPrefixToID:string1
pdbID	AddPrefixToID:string2
AddPrefixToID:output	AddSuffix:string1
RCSBSuffix:value	AddSuffix:string2
AddSuffix:output	FetchPage:url
FetchPage:contents	pdbFlatFile

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Information Workflow Type

Taverna 1

Information Uploader

Alan Williams

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Information Version 1 (of 1)

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Tomoinn

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Taverna 1.7.1 workflow workbench examples

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Information Attributed By (3)

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Information Statistics

4023 viewings

4161 downloads

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Version History

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Fetch PDB flatfile from RCSB server

Created by Alan Williams on Wednesday 05 March 2008 14:13:24 (UTC)

Last edited by Alan Williams on Monday 31 March 2008 16:01:41 (UTC)

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