User: Marco Roos
Name: Marco Roos Joined: Saturday 21 July 2007 10:43:23 (UTC) Last seen: Thursday 28 April 2016 21:38:56 (UTC) Email (public): m.roos [at] lumc.nl Website: http://www.lumc.nl/con/6020/39898/909290026392525 Location: Leiden, Netherlands |
Marco Roos has been credited 48 times Marco Roos has an average rating of: 4.0 / 5 (8 ratings in total) for their items |
My role as a biologist and bioinformatician in e-science is to help increase the usefulness of emerging information technologies for biology, while experimenting with new ways to increase insight into mechanisms related to structure and function of DNA in the cell. I experiment with technologies such as workflow, knowledge extraction from text, semantic web and virtual research environments such as myExperiment.
More information on the blog below (originally uploaded as an example for the 'NBIC on workflows' workshop in Lunteren, the Netherlands, March 2008).
Other contact details:
Also see my web page at the University of Amsterdam: http://home.medewerker.uva.nl/m.roos1
Interests:
Structure/function relationship of DNA in the cell, e-science, automated support for modeling biological mechanisms by knowledge extraction and semantic web technology.
Field/Industry: Biology
Occupation/Role(s): PhD, e-(bio)scientist (biology 'power-user'), biology e-Science liaison for NBIC and e-Science organisations
Organisation(s):
Leiden University Medical Centre
University of Amsterdam
NBIC
OMII-UK / myGrid
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File
HTT-HPO concept profile match result
Created: 2014-10-20 08:26:32 | Last updated: 2014-10-20 08:35:28
Credits: Marco Roos Rajireturn BioSemantics
License: Creative Commons Attribution-Share Alike 3.0 Unported License
File type: Excel workbook
Comments: 0 | Viewed: 25 times | Downloaded: 0 times
Tags:
File
Concept Profile of phenotype Chorea
Created: 2014-10-20 08:34:10
Credits: Marco Roos BioSemantics
License: Creative Commons Attribution-Share Alike 3.0 Unported License
File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
Comments: 0 | Viewed: 27 times | Downloaded: 0 times
Tags:
File
The Hypothesis for the wf4ever Demo Pack 2013
Created: 2013-01-30 14:06:43 | Last updated: 2013-01-30 14:07:25
Credits: Marco Roos
License: Creative Commons Attribution-Share Alike 3.0 Unported License
File type: Plain text
Comments: 0 | Viewed: 43 times | Downloaded: 13 times
This File has no tags!
File
New run.sh for Taverna 2 (in case of problems with n...
Created: 2009-05-28 09:25:03
Credits: Marco Roos
License: Creative Commons Attribution-Share Alike 3.0 Unported License
File type: Trident (Package)
Comments: 0 | Viewed: 42 times | Downloaded: 25 times
This File has no tags!
File
From biologist to web service to Taverna to myExperi...
Created: 2008-03-21 19:00:12 | Last updated: 2008-03-23 10:39:27
Credits: Marco Roos Martijn Schuemie AID myGrid
License: Creative Commons Attribution-Share Alike 3.0 Unported License
File type: AVI video
Comments: 1 | Viewed: 471 times | Downloaded: 374 times
Tags:
- AIDA
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- biorange_nl
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- demo
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- e-science
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- NBIC
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- nbiconworkflows
Workflow
Get properties of drugs for genes by Entre... (3)
Created: 2015-07-24 | Last updated: 2015-07-28
Credits: Katerina Nosikova Marco Roos Eleni Eelke van der Horst Elizaveta Besedina
Workflow
Match concept to HPO profiles (1)
Created: 2014-10-20
Credits: Marco Roos BioSemantics
Attributions: Match concept profiles Get concept information
Workflow
HPO-UMLS-ConceptID mapping (1)
Created: 2014-10-20
Credits: Marco Roos BioSemantics
Workflow
Get concept suggestions from term (1)
Created: 2015-02-18
Credits: Eelke van der Horst Kristina Hettne Marco Roos Eleni
Attributions: Get concept suggestions from term
Workflow
Created: 2013-07-06
Credits: Marco Roos Open PHACTS
Workflow
Created: 2013-06-18
Credits: Marco Roos Katy Wolstencroft paul groth
Workflow
Free text search to Concept Wiki URI (4)
Created: 2013-06-24 | Last updated: 2013-06-24
Credits: Ian Dunlop Katy Wolstencroft Marco Roos paul groth
Workflow
GWAS to biomedical concept (3)
Created: 2013-04-15 | Last updated: 2014-07-14
Credits: Kristina Hettne Harish Dharuri Marco Roos Reinout van Schouwen
Workflow
Annotate a gene list with disease concepts (1)
Created: 2013-02-06
Credits: Kristina Hettne Reinout van Schouwen Marco Roos BioSemantics
Attributions: SNPs to Concept Set through Concept Profile Matching v2
Workflow
Match concept profiles with predefined set (2)
Created: 2013-02-05 | Last updated: 2014-07-14
Credits: Kristina Hettne Marco Roos Reinout van Schouwen BioSemantics
Workflow
Created: 2012-06-26 | Last updated: 2014-07-14
Credits: Kristina Hettne Marco Roos Reinout van Schouwen Martijn Schuemie BioSemantics
Workflow
SNPs to Concept Set through Concept Profil... (6)
Created: 2012-06-26 | Last updated: 2013-02-05
Credits: Kristina Hettne Eleni Harish Dharuri Reinout van Schouwen Marco Roos Martijn Schuemie BioSemantics
Attributions: Find Supporting Documents SNP_ID2EntrezGene_ID DatabaseID to ConceptID Match gene lists based on information in literature Match concept profiles Explain concept scores
Workflow
Get Concept IDs (5)
Created: 2012-07-06 | Last updated: 2014-07-14
Credits: Kristina Hettne Reinout van Schouwen Martijn Schuemie Marco Roos BioSemantics
Workflow
Find co-occurring documents (6)
Created: 2012-07-13 | Last updated: 2014-07-14
Credits: Kristina Hettne Reinout van Schouwen Marco Roos Martijn Schuemie BioSemantics
Workflow
Mining the Kegg pathway database with the ... (1)
Created: 2013-01-30
Credits: Marco Roos
Workflow
Created: 2012-07-06 | Last updated: 2014-07-14
Credits: Kristina Hettne Marco Roos Reinout van Schouwen Martijn Schuemie BioSemantics
Workflow
Created: 2011-12-02 | Last updated: 2014-07-14
Credits: Marco Roos Kristina Hettne Martijn Schuemie Reinout van Schouwen
Workflow
Created: 2012-07-06 | Last updated: 2014-07-14
Credits: Kristina Hettne Reinout van Schouwen Marco Roos Martijn Schuemie BioSemantics
Workflow
Created: 2012-06-25 | Last updated: 2014-07-14
Credits: Marco Roos Martijn Schuemie Reinout van Schouwen BioSemantics
Workflow
Match gene lists based on information in l... (7)
Created: 2012-04-17 | Last updated: 2012-04-25
Credits: Marco Roos Reinout van Schouwen Eleni Kristina Hettne BioSemantics
Attributions: Match concept profiles Explain concept scores
Workflow
Created: 2010-05-10 | Last updated: 2013-08-16
Credits: Marco Roos AID
Workflow
Gene expression interpretation by the Glob... (1)
Created: 2011-04-26 | Last updated: 2011-04-26
Credits: Marco Roos
Workflow
BioAID_EnirchBioModelWithProteinsFromText (7)
Created: 2009-05-16 | Last updated: 2009-05-16
Credits: Marco Roos Sophia katrenko Andrew Gibson M. Scott Marshall Willem van Hage Edgar Martijn Schuemie AID
Workflow
Created: 2009-05-06 | Last updated: 2009-05-06
Credits: Wassinki Pieter Neerincx Katy Wolstencroft Marco Roos
Workflow
BioAID_ProteinDiscovery_filterOnHumanUnipr... (11)
Created: 2009-05-28
Credits: Marco Roos Martijn Schuemie AID AID_myGrid_collaboration
Attributions: BioAID_DiseaseDiscovery_RatHumanMouseUniprotFilter
Workflow
Demo_DiseaseDiscovery_byHumanUniprot_scaffold (1)
Created: 2007-12-10
Credits: Marco Roos AID
Workflow
Created: 2007-12-10
Credits: Marco Roos Edgar AID
Workflow
Created: 2007-12-10 | Last updated: 2007-12-10
Credits: Marco Roos Edgar AID
Workflow
Lucene_bioquery_optimizer_MR1 (1)
Created: 2007-12-10
Credits: Marco Roos AID
Workflow
Workflow
Workflow
Extract_proteins (2)
Created: 2007-12-10 | Last updated: 2007-12-10
Credits: Marco Roos
Workflow
Created: 2007-12-10 | Last updated: 2007-12-10
Credits: Marco Roos Sophia katrenko AID
Workflow
TestIteratorStrategy_withCloning (2)
Created: 2007-11-29 | Last updated: 2007-11-29
Credits: Marco Roos
Workflow
CloneItemsInList (1)
Created: 2007-11-29
Credits: Marco Roos
Workflow
TestIteratorStrategy_withNesting (1)
Created: 2007-11-29
Credits: Marco Roos Tomoinn
Workflow
TestIterator (1)
Created: 2007-11-28
Credits: Marco Roos
Workflow
BioAID_Discover_proteins_from_text_plus_sy... (1)
Created: 2007-11-15
Credits: Marco Roos Martijn Schuemie AID
Workflow
Discover_proteins_from_text (2)
Created: 2007-11-15 | Last updated: 2007-11-15
Credits: Marco Roos AID
Workflow
Created: 2007-10-03 | Last updated: 2007-11-15
Credits: Marco Roos AID
Workflow
BioAID_DiseaseDiscovery_RatHumanMouseUnipr... (4)
Created: 2008-12-15 | Last updated: 2011-08-11
Credits: Marco Roos AID
Workflow
Created: 2007-11-14 | Last updated: 2007-11-15
Credits: Marco Roos Martijn Schuemie AID
Attributions: BioAID_DiseaseDiscovery_RatHumanMouseUniprotFilter
Workflow
Created: 2007-10-03 | Last updated: 2007-11-13
Credits: Marco Roos Martijn Schuemie AID