My role as a biologist and bioinformatician in e-science is to help increase the usefulness of emerging information technologies for biology, while experimenting with new ways to increase insight into mechanisms related to structure and function of DNA in the cell. I experiment with technologies such as workflow, knowledge extraction from text, semantic web and virtual research environments such as myExperiment.

More information on the blog below (originally uploaded as an example for the 'NBIC on workflows' workshop in Lunteren, the Netherlands, March 2008).

http://www.myexperiment.org/blogs/15

Other contact details:

Also see my web page at the University of Amsterdam: http://home.medewerker.uva.nl/m.roos1

Interests:

Structure/function relationship of DNA in the cell, e-science, automated support for modeling biological mechanisms by knowledge extraction and semantic web technology.

Field/Industry: Biology

Occupation/Role(s): PhD, e-(bio)scientist (biology 'power-user'), biology e-Science liaison for NBIC and e-Science organisations

Organisation(s):

Leiden University Medical Centre
University of Amsterdam
NBIC
OMII-UK / myGrid

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Marco Roos

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RD-Connect D4.03 Deliverable Pack

Created: 2014-10-19 21:05:07 | Last updated: 2014-10-20 16:34:40

This pack compiles workflows and workflow results for Deliverable D4.03 for RD-Connect (http://rd-connect.eu).

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BioSemantics Concept Profile Generation Workflows

Created: 2014-06-04 12:31:09 | Last updated: 2014-06-04 13:01:44

This pack compiles concept profile-generation workflows by the LUMC/EMC Biosemantics groups.This work is made possible by EU projects 'Workflow Forever' (www.wf4ever-project.org) and RD-Connect (www.rd-connect.eu), and contribution from bioinformatics students from the Hogeschool Leiden.

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Demo pack for wf4ever

Created: 2013-01-30 13:53:40 | Last updated: 2013-01-30 14:08:08

This pack is a mirror of the Demo pack for the wf4ever review Demo. You should not be using any of this for real work.

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Marco Roos

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wf4ever Deliverable 6.3 Pack

Created: 2011-12-02 09:31:26 | Last updated: 2011-12-02 10:21:03

This pack contains (references to) the workflows for GWAS analysis by workflows that perform pathway and GO analysis and biosemantics data interpretation (a special form of text mining). This pack aggregates the deliverable materials for month 8 for Work Package 6. The workflows have not been published in the scientific domain yet, so its content cannot yet be made public. They are available upon request, in particular for reviewers. Please contact Kristina Hettne or Marco Roos (see credit...

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AIDA remote runners

Created: 2009-05-15 16:08:03 | Last updated: 2009-05-15 16:11:20

Runners for AIDA demonstrations and testing

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Marco Roos

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Supporting material for Roos et al., BMC Bioinformat...

Created: 2009-05-15 15:45:32 | Last updated: 2011-08-11 10:01:23

Supporting material for BMC Bioinformatics, supplement for Semantic Web Applications and Tools for Life Science (2009) Structuring and extracting knowledge for the support of hypothesis generation in molecular biology Marco Roos, M. Scott Marshall, Andrew P. Gibson, Martijn Schuemie, Edgar Meij, Sophia Katrenko, Willem Robert van Hage, Konstantinos Krommydas, Pieter W. Adriaans Acknowledgements We thank the myGrid team and OMII-UK for their support in applying their e-Science tools, and M...

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AIDA demo pack

Created: 2008-12-14 21:35:43 | Last updated: 2009-05-01 17:35:26

Pack with AIDA demo material

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AIDA toolbox

Created: 2008-08-01 11:33:03 | Last updated: 2010-02-14 16:04:25

Adaptive Information Disclosure Application toolbox: AIDA web services for automated knowledge extraction and knowledge management Documentation

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e-science tool pack

Created: 2008-08-01 10:52:42 | Last updated: 2008-08-01 12:06:07

Pack of tools and software components that can be used to enhance your research. 'e-science' characteristics: interoperabie with other tools free to use by academics components can be shared and reused, potentially for other means stimulating sharing and reusing components

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