OPS_FreetextToTargetconceptname00 ezh2 (homo sapiens) 2013-06-18 13:59:35.575 UTC concept name (free text search in ConceptWiki) 2013-06-18 13:59:20.466 UTC limit00 Limit on the number of results ConceptWiki will return (the output of the whole workflow depends on that, i.e. this number or less). 2013-06-18 14:00:38.692 UTC 10 2013-06-18 14:00:19.701 UTC app_key00 Application key from OpenPHACTS. A 32 character alphanumeric string. See http://dev.openphacts.org/ 2013-06-18 18:15:37.663 UTC app_id00 Key identifier from OpenPHACTS, a 8 character alphanumeric string. See dev.openphacts.com. 2013-06-18 18:17:13.518 UTC conceptwiki_xmlconceptwiki_urlstargetInfo_xmlprefLabelfunctionOPS_URI_from_Textresponseformat0metadata0conceptname0limit0app_key0app_id0responseBody00 This OpenPHACTS REST call retrieves the concept URIs from ConceptWiki that match the input query. It is a 'greedy' free text search, i.e. adding more terms will typically produce more precise results. 2013-06-18 14:02:50.536 UTC net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity GET https://beta.openphacts.org/search/freetext?app_id={app_id}&app_key={app_key}&q={conceptname}&limit={limit}&_format={responseformat}&_metadata={metadata} application/xml application/xml String false false false false true limit java.lang.String conceptname java.lang.String app_key java.lang.String app_id java.lang.String metadata java.lang.String responseformat java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeresponseformat_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity xml net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemetadata_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity all net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokegeturlsxml_text0nodelist11 extract the target URI from the ConceptWiki output 2013-06-18 14:03:21.894 UTC net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="utf-8"?> <result format="linked-data-api" version="0.2" href="https://beta.openphacts.org/search/freetext?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"><primaryTopic id="_:searchResult"><type>Freetext Search</type><searchTerm>ezh2</searchTerm><result><item href="http://www.conceptwiki.org/concept/f3744d4c-a7e1-4123-bbcf-77a8baa61cbf"><prefLabel xml:lang="en">Ezh2</prefLabel><semanticTag><item id="_:tagNode0"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode1"><prefLabel xml:lang="en">Non species specific</prefLabel><uuid href="504ea493-f757-4921-b699-3843fcacae1d"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>&lt;em&gt;Ezh2&lt;/em&gt;</match></item><item href="http://www.conceptwiki.org/concept/4adca492-1879-459b-9979-a4c93568b5c3"><prefLabel xml:lang="en">ezh2</prefLabel><semanticTag><item id="_:tagNode2"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode3"><prefLabel xml:lang="en">Non species specific</prefLabel><uuid href="504ea493-f757-4921-b699-3843fcacae1d"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>&lt;em&gt;ezh2&lt;/em&gt;</match></item><item href="http://www.conceptwiki.org/concept/dd3c5578-0d7f-4833-81ec-45707858e50b"><prefLabel xml:lang="en">EZH2</prefLabel><semanticTag><item id="_:tagNode4"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode5"><prefLabel xml:lang="en">Non species specific</prefLabel><uuid href="504ea493-f757-4921-b699-3843fcacae1d"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>&lt;em&gt;EZH2&lt;/em&gt;</match></item><item href="http://www.conceptwiki.org/concept/7d61d18b-daf5-489f-a311-9eaaad549dfb"><prefLabel xml:lang="en">ezh2-a</prefLabel><semanticTag><item id="_:tagNode6"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode7"><prefLabel xml:lang="en">Non species specific</prefLabel><uuid href="504ea493-f757-4921-b699-3843fcacae1d"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>&lt;em&gt;ezh2&lt;/em&gt;-a</match></item><item href="http://www.conceptwiki.org/concept/db9aadb2-5ec1-4416-886c-5f6282cd3207"><prefLabel xml:lang="en">ezh2-b</prefLabel><semanticTag><item id="_:tagNode8"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode9"><prefLabel xml:lang="en">Non species specific</prefLabel><uuid href="504ea493-f757-4921-b699-3843fcacae1d"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>&lt;em&gt;ezh2&lt;/em&gt;-b</match></item><item href="http://www.conceptwiki.org/concept/c907137b-9352-466a-9dca-8b74c333f52d"><prefLabel xml:lang="en">EZH2-A</prefLabel><semanticTag><item id="_:tagNode10"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode11"><prefLabel xml:lang="en">Non species specific</prefLabel><uuid href="504ea493-f757-4921-b699-3843fcacae1d"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>&lt;em&gt;EZH2&lt;/em&gt;-A</match></item><item href="http://www.conceptwiki.org/concept/407000bf-a48c-4bb4-a822-d09a86c7e47b"><prefLabel xml:lang="en">EZH2-B</prefLabel><semanticTag><item id="_:tagNode12"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode13"><prefLabel xml:lang="en">Non species specific</prefLabel><uuid href="504ea493-f757-4921-b699-3843fcacae1d"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>&lt;em&gt;EZH2&lt;/em&gt;-B</match></item><item href="http://www.conceptwiki.org/concept/0a774df8-3044-4c1c-a667-cda41596d8b8"><prefLabel xml:lang="en">ezh2 (Danio rerio)</prefLabel><exactMatch id="_:urlNode0"><url href="http://www.uniprot.org/uniprot/Q08BS4"/><matchType href="PREFERRED"/></exactMatch><altLabel xml:lang="en">zgc:152758</altLabel><semanticTag><item id="_:tagNode14"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode15"><prefLabel xml:lang="en">ezh2</prefLabel><uuid href="4adca492-1879-459b-9979-a4c93568b5c3"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>ezh2 (Da&lt;em&gt;ezh2&lt;/em&gt;nio rerio)</match></item><item href="http://www.conceptwiki.org/concept/62ca6444-326c-4461-8972-7729f06dd02c"><prefLabel xml:lang="en">EZH2 (Homo sapiens)</prefLabel><exactMatch id="_:urlNode1"><url href="http://www.uniprot.org/uniprot/Q15910"/><matchType href="PREFERRED"/></exactMatch><altLabel xml:lang="en">KMT6</altLabel><semanticTag><item id="_:tagNode16"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode17"><prefLabel xml:lang="en">EZH2</prefLabel><uuid href="dd3c5578-0d7f-4833-81ec-45707858e50b"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>EZH2 (Hom&lt;em&gt;EZH2&lt;/em&gt;o sapiens)</match></item><item href="http://www.conceptwiki.org/concept/fd376219-a4dc-4c87-a3f7-712b50bd496b"><prefLabel xml:lang="en">Ezh2 (Mus musculus)</prefLabel><exactMatch id="_:urlNode2"><url href="http://www.uniprot.org/uniprot/Q61188"/><matchType href="PREFERRED"/></exactMatch><altLabel xml:lang="en">Enx1h</altLabel><semanticTag><item id="_:tagNode18"><prefLabel xml:lang="en">Gene or Genome</prefLabel><uuid href="a3b5c57e-8ac1-46ac-afef-3347d40c4d37"/><deleted datatype="boolean">false</deleted></item><item id="_:tagNode19"><prefLabel xml:lang="en">Ezh2</prefLabel><uuid href="f3744d4c-a7e1-4123-bbcf-77a8baa61cbf"/><deleted datatype="boolean">false</deleted></item></semanticTag><match>Ezh2 (Mus&lt;em&gt;Ezh2&lt;/em&gt; musculus)</match></item></result><limit>10</limit></primaryTopic><site href="http://www.openphacts.org/api#conceptWiki"><label>Concept Wiki services</label></site><wasResultOf id="_:execution"><type href="http://purl.org/linked-data/api/vocab#Execution"/><viewingResult id="_:viewingResult"><type href="http://purl.org/net/opmv/types/sparql#QueryResult"/><query id="_:viewingQuery"><value/></query><endpoint id="_:sparqlEndpoint"><url href="http://ops-virt:8891/sparql/"/><type href="http://www.w3.org/ns/sparql-service-description#Service"/></endpoint></viewingResult><variableBinding><item id="_:var_q"><value>ezh2</value><name>q</name></item><item id="_:var_limit"><value>10</value><name>limit</name></item><item id="_:var_branch"><value>The search results will be filtered by this source authority; optional. Possible values: 1 = Community, 2 = UMLS, 3 = SwissProt, 4 = ChemSpider, 5 = ConceptWiki</value><name>branch</name></item><item id="_:var_app_id"><value>373e90ce</value><name>app_id</name></item><item id="_:var_app_key"><value>f16e7a777c5b451a76d7b49680cdb086</value><name>app_key</name></item><item id="_:var__format"><value>xml</value><name>_format</name></item><item id="_:var__metadata"><value>all</value><name>_metadata</name></item></variableBinding><termBinding><item id="_:term_limit"><property href="http://www.openphacts.org/api#limit"/><label>limit</label></item><item id="_:term_q"><property href="http://www.openphacts.org/api#q"/><label>q</label></item></termBinding><selectedViewer href="http://www.openphacts.org/api#externalResponseViewer"/><selectedEndpoint href="https://beta.openphacts.org/api-config"/><selectedAPI href="http://www.openphacts.org/api#conceptWiki"><label>Concept Wiki services</label></selectedAPI><processor id="_:processor"><type href="http://purl.org/linked-data/api/vocab#Service"/><software id="_:pueliaVersion"><label>Puelia v0.9</label><type href="http://usefulinc.com/ns/doap#Version"/><revision>0.9</revision><releaseOf id="_:puelia"><label>Puelia</label><type href="http://usefulinc.com/ns/doap#Project"/><wiki href="http://code.google.com/p/puelia-php/w/list"/><repository id="_:pueliaRepository"><type href="http://usefulinc.com/ns/doap#SVNRepository"/><location href="http://puelia-php.googlecode.com/svn/trunk/"/><browse href="http://code.google.com/p/puelia-php/source/browse/"/></repository><doap_programming_language>PHP</doap_programming_language><implements href="http://code.google.com/p/linked-data-api/wiki/Specification"><label xml:lang="en">Linked Data API Specification</label><type href="http://usefulinc.com/ns/doap#Specification"/></implements><homepage href="http://code.google.com/p/puelia-php/"/><doap_bug_database href="http://code.google.com/p/puelia-php/issues/list"/></releaseOf></software></processor></wasResultOf><definition href="https://beta.openphacts.org/api-config"/><version href="https://beta.openphacts.org/search/freetext?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all&amp;_view=externalResponseViewer"><label>externalResponseViewer</label><isVersionOf href="https://beta.openphacts.org/search/freetext?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"/></version><format><item href="https://beta.openphacts.org/search/freetext.rdf?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"><label>RDF/XML</label><name>rdf</name><isFormatOf href="https://beta.openphacts.org/search/freetext?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"/><format id="_:format_rdf"><label>application/rdf+xml</label></format></item><item href="https://beta.openphacts.org/search/freetext.rdfjson?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"><label>RDF/JSON</label><name>rdfjson</name><isFormatOf href="https://beta.openphacts.org/search/freetext?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"/><format id="_:format_rdfjson"><label>application/json</label></format></item><item href="https://beta.openphacts.org/search/freetext.ttl?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"><label>Turtle</label><name>ttl</name><isFormatOf href="https://beta.openphacts.org/search/freetext?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"/><format id="_:format_ttl"><label>text/turtle</label></format></item><item href="https://beta.openphacts.org/search/freetext.json?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"><label>Simple JSON</label><name>json</name><isFormatOf href="https://beta.openphacts.org/search/freetext?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"/><format id="_:format_json"><label>application/json</label></format></item><item href="https://beta.openphacts.org/search/freetext.xml?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"><label>Simple XML</label><name>xml</name><isFormatOf href="https://beta.openphacts.org/search/freetext?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"/><format id="_:format_xml"><label>application/xml</label></format></item><item href="https://beta.openphacts.org/search/freetext.tsv?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"><label>Comma Seperated Variables</label><name>tsv</name><isFormatOf href="https://beta.openphacts.org/search/freetext?app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;q=ezh2&amp;limit=10&amp;_format=xml&amp;_metadata=all"/><format id="_:format_tsv"><label>text/tab-separated-values</label></format></item></format></result> /result/primaryTopic/result/item/@href net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeURLencodeurl0enc00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity url 0 text/plain java.lang.String true enc 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeOPS_getTargetInforesponseformat0url0app_key0app_id0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity GET https://beta.openphacts.org/target?uri={url}&app_id={app_id}&app_key={app_key}&_format={responseformat} application/xml application/xml String false false false false true app_key java.lang.String app_id java.lang.String url java.lang.String responseformat java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_prefLabelxml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="utf-8"?> <result format="linked-data-api" version="0.2" href="https://beta.openphacts.org/target?uri=http%3A%2F%2Fwww%2Econceptwiki%2Eorg%2Fconcept%2F62ca6444%2D326c%2D4461%2D8972%2D7729f06dd02c&amp;app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;_format=xml"><primaryTopic href="http://www.conceptwiki.org/concept/62ca6444-326c-4461-8972-7729f06dd02c"><prefLabel xml:lang="en">EZH2 (Homo sapiens)</prefLabel><exactMatch><item href="http://www.conceptwiki.org/concept/62ca6444-326c-4461-8972-7729f06dd02c"/><item href="http://purl.uniprot.org/uniprot/Q15910"><seeAlso href="http://purl.uniprot.org/pdb/2C6V"/><inDataset href="http://purl.uniprot.org"/><sequence>MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPEEREEKQKDLEDHRDDKESRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHPFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDETSSSSEANSRCQTPIKMKPNIEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSIIAPAPAEDVDTPPRKKKRKHRLWAAHCRKIQLKKDGSSNHVYNYQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQADALKYVGIEREMEIP</sequence><organism href="http://purl.uniprot.org/taxonomy/9606"/><existence href="http://purl.uniprot.org/core/Evidence_at_Protein_Level_Existence"/><classifiedWith><item href="http://purl.uniprot.org/keywords/832"/><item href="http://purl.uniprot.org/go/0003677"/><item href="http://purl.uniprot.org/go/0018024"/><item href="http://purl.uniprot.org/go/0006351"/><item href="http://purl.uniprot.org/keywords/1185"/><item href="http://purl.uniprot.org/keywords/156"/><item href="http://purl.uniprot.org/keywords/621"/><item href="http://purl.uniprot.org/go/0034968"/><item href="http://purl.uniprot.org/keywords/678"/><item href="http://purl.uniprot.org/go/0042054"/><item href="http://purl.uniprot.org/keywords/225"/><item href="http://purl.uniprot.org/go/0035098"/><item href="http://purl.uniprot.org/keywords/949"/><item href="http://purl.uniprot.org/keywords/25"/><item href="http://purl.uniprot.org/keywords/539"/><item href="http://purl.uniprot.org/go/0045892"/><item href="http://purl.uniprot.org/keywords/597"/><item href="http://purl.uniprot.org/keywords/489"/><item href="http://purl.uniprot.org/go/0048387"/><item href="http://purl.uniprot.org/keywords/2"/><item href="http://purl.uniprot.org/keywords/805"/></classifiedWith><alternativeName><item>Enhancer of zeste homolog 2</item><item>Lysine N-methyltransferase 6</item><item>ENX-1</item></alternativeName><Function_Annotation>Polycomb group (PcG) protein. Catalytic subunit of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. Able to mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. Compared to EZH2-containing complexes, it is more abundant in embryonic stem cells and plays a major role in forming H3K27me3, which is required for embryonic stem cell identity and proper differentiation. The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems. Genes repressed by the PRC2/EED-EZH2 complex include HOXC8, HOXA9, MYT1, CDKN2A and retinoic acid target genes. EZH2 can also methylate non-histone proteins such as the transcription factor GATA4.</Function_Annotation></item></exactMatch><inDataset href="http://www.conceptwiki.org"/></primaryTopic><extendedMetadataVersion href="https://beta.openphacts.org/target?uri=http%3A%2F%2Fwww%2Econceptwiki%2Eorg%2Fconcept%2F62ca6444%2D326c%2D4461%2D8972%2D7729f06dd02c&amp;app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;_format=xml&amp;_metadata=all%2Cviews%2Cformats%2Cexecution%2Cbindings%2Csite"/><definition href="https://beta.openphacts.org/api-config"/></result> /result/primaryTopic/prefLabel net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_functionxml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="utf-8"?> <result format="linked-data-api" version="0.2" href="https://beta.openphacts.org/target?uri=http%3A%2F%2Fwww%2Econceptwiki%2Eorg%2Fconcept%2F62ca6444%2D326c%2D4461%2D8972%2D7729f06dd02c&amp;app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;_format=xml"><primaryTopic href="http://www.conceptwiki.org/concept/62ca6444-326c-4461-8972-7729f06dd02c"><prefLabel xml:lang="en">EZH2 (Homo sapiens)</prefLabel><exactMatch><item href="http://www.conceptwiki.org/concept/62ca6444-326c-4461-8972-7729f06dd02c"/><item href="http://purl.uniprot.org/uniprot/Q15910"><seeAlso href="http://purl.uniprot.org/pdb/2C6V"/><inDataset href="http://purl.uniprot.org"/><sequence>MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPEEREEKQKDLEDHRDDKESRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHPFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDETSSSSEANSRCQTPIKMKPNIEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSIIAPAPAEDVDTPPRKKKRKHRLWAAHCRKIQLKKDGSSNHVYNYQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQADALKYVGIEREMEIP</sequence><organism href="http://purl.uniprot.org/taxonomy/9606"/><existence href="http://purl.uniprot.org/core/Evidence_at_Protein_Level_Existence"/><classifiedWith><item href="http://purl.uniprot.org/keywords/832"/><item href="http://purl.uniprot.org/go/0003677"/><item href="http://purl.uniprot.org/go/0018024"/><item href="http://purl.uniprot.org/go/0006351"/><item href="http://purl.uniprot.org/keywords/1185"/><item href="http://purl.uniprot.org/keywords/156"/><item href="http://purl.uniprot.org/keywords/621"/><item href="http://purl.uniprot.org/go/0034968"/><item href="http://purl.uniprot.org/keywords/678"/><item href="http://purl.uniprot.org/go/0042054"/><item href="http://purl.uniprot.org/keywords/225"/><item href="http://purl.uniprot.org/go/0035098"/><item href="http://purl.uniprot.org/keywords/949"/><item href="http://purl.uniprot.org/keywords/25"/><item href="http://purl.uniprot.org/keywords/539"/><item href="http://purl.uniprot.org/go/0045892"/><item href="http://purl.uniprot.org/keywords/597"/><item href="http://purl.uniprot.org/keywords/489"/><item href="http://purl.uniprot.org/go/0048387"/><item href="http://purl.uniprot.org/keywords/2"/><item href="http://purl.uniprot.org/keywords/805"/></classifiedWith><alternativeName><item>Enhancer of zeste homolog 2</item><item>Lysine N-methyltransferase 6</item><item>ENX-1</item></alternativeName><Function_Annotation>Polycomb group (PcG) protein. Catalytic subunit of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. Able to mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. Compared to EZH2-containing complexes, it is more abundant in embryonic stem cells and plays a major role in forming H3K27me3, which is required for embryonic stem cell identity and proper differentiation. The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems. Genes repressed by the PRC2/EED-EZH2 complex include HOXC8, HOXA9, MYT1, CDKN2A and retinoic acid target genes. EZH2 can also methylate non-histone proteins such as the transcription factor GATA4.</Function_Annotation></item></exactMatch><inDataset href="http://www.conceptwiki.org"/></primaryTopic><extendedMetadataVersion href="https://beta.openphacts.org/target?uri=http%3A%2F%2Fwww%2Econceptwiki%2Eorg%2Fconcept%2F62ca6444%2D326c%2D4461%2D8972%2D7729f06dd02c&amp;app_id=373e90ce&amp;app_key=f16e7a777c5b451a76d7b49680cdb086&amp;_format=xml&amp;_metadata=all%2Cviews%2Cformats%2Cexecution%2Cbindings%2Csite"/><definition href="https://beta.openphacts.org/api-config"/></result> /result/primaryTopic/exactMatch/item/Function_Annotation net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeOPS_URI_from_Textresponseformatresponseformat_valuevalueOPS_URI_from_Textmetadatametadata_valuevalueOPS_URI_from_TextconceptnameconceptnameOPS_URI_from_TextlimitlimitOPS_URI_from_Textapp_keyapp_keyOPS_URI_from_Textapp_idapp_idgeturlsxml_textOPS_URI_from_TextresponseBodyURLencodeurlgeturlsnodelistOPS_getTargetInforesponseformatresponseformat_valuevalueOPS_getTargetInfourlURLencodeencOPS_getTargetInfoapp_keyapp_keyOPS_getTargetInfoapp_idapp_idget_prefLabelxml_textOPS_getTargetInforesponseBodyget_functionxml_textOPS_getTargetInforesponseBodyconceptwiki_xmlOPS_URI_from_TextresponseBodyconceptwiki_urlsgeturlsnodelisttargetInfo_xmlOPS_getTargetInforesponseBodyprefLabelget_prefLabelnodelistfunctionget_functionnodelist 9a87b87e-6852-42f8-9a30-dedcb162b305 2013-06-18 18:30:44.595 UTC 560d4f05-8865-4a9b-942a-24f585ea4835 2013-06-18 11:19:37.484 UTC OPS_FreetextToTargetInfo 2013-06-18 18:30:40.564 UTC 976c83b5-9064-4646-86e4-6b3f33c55709 2013-06-18 11:35:04.301 UTC 2d88b62e-f65b-403b-b237-b44f6387063d 2013-06-18 11:03:10.686 UTC 4bc93f25-c36c-4ab0-9191-ff2cb5fa520c 2013-06-18 18:19:16.860 UTC bae1441d-fa05-43bc-b1e3-3019150b0525 2013-06-18 14:13:24.960 UTC 0d78f744-46c5-4c7c-99eb-accad964e840 2013-06-18 14:09:57.139 UTC 8a6bafe5-b559-4ca8-8a66-f34dc083fdbb 2013-06-18 11:36:29.768 UTC Workflow to retrieve target information for the concepts as refered to by humans (the input). Known issues: It produces error values for the concepts returned by ConceptWiki that are apparently not present in OPS (e.g. for "ezh2" and limit=10, it gives 7/10 error values vs "ezh2 (homo sapiens)" giving 2 valid values). 2013-06-18 18:30:33.586 UTC e9180142-3c52-459c-9eb2-4e29381056f6 2013-06-18 13:39:17.883 UTC 57aa64fc-c27f-417d-a2dc-4c8e6242c6f5 2013-06-18 11:23:26.10 UTC d2c84e66-343b-4185-977e-bf5a93b2ff4a 2013-06-18 10:55:55.947 UTC Marco Roos Paul Groth Katy Wolstencroft 2013-06-18 13:54:13.352 UTC 31131035-580b-4320-adb7-ec83e166cbce 2013-06-18 14:09:15.856 UTC 35c2355c-a3b0-41c8-ba47-c17fe76d415b 2013-06-18 11:25:02.564 UTC 2fd287d5-5f66-4eba-9bfb-d2c4f590bfa9 2013-06-18 10:30:23.846 UTC c17dadda-319a-4635-bcf3-b0674ec9472b 2013-06-18 11:29:17.530 UTC 24f33c17-940d-42e5-b3db-5bef1c791f13 2013-06-18 11:11:01.255 UTC 08246a29-fc64-4441-a704-a7b64009bb26 2013-06-18 11:18:15.448 UTC