Link_protein_to_OMIM_disease

Created: 2007-12-10 22:13:35

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Workflow Components

Inputs (1)

Name	Description
keyword

Processors (8)

Name	Type	Description
Flatten_list	local
Split_OMIM_results	local
Remove_duplicate_strings	local
Extract_diseases_from_OMIM	local
search	arbitrarywsdl	get Keyword
filter_disease_regexp	stringconstant
split_OMIM_regexp	stringconstant
label_OMIM_disease	beanshell

Beanshells (1)

Name	Description	Inputs	Outputs
label_OMIM_disease		OMIM_disease_string	OMIM_disease_label

Outputs (1)

Name	Description
OMIM_disease_label

Links (9)

Source	Sink
keyword	search:keyword
Extract_diseases_from_OMIM:filteredlist	label_OMIM_disease:OMIM_disease_string
Flatten_list:outputlist	Remove_duplicate_strings:stringlist
Remove_duplicate_strings:strippedlist	OMIM_disease_label
Split_OMIM_results:split	Extract_diseases_from_OMIM:stringlist
filter_disease_regexp:value	Extract_diseases_from_OMIM:regex
label_OMIM_disease:OMIM_disease_label	Flatten_list:inputlist
search:Result	Split_OMIM_results:string
split_OMIM_regexp:value	Split_OMIM_results:regex

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Information Workflow Type

Taverna 1

Information Uploader

Marco Roos

Information License

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Information Version 1 (of 1)

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Information Favourited By (1)

Nolanfyh

Information Statistics

2746 viewings

2646 downloads

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Link_protein_to_OMIM_disease

Created by Marco Roos on Monday 10 December 2007 22:13:35 (UTC)

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This workflow was based on BioAID_DiseaseDiscovery, changes: expects only one protein name, adds protein synonyms). This workflow finds diseases relevant to the query string via the following steps: A user query: a single protein name Add synonyms (service courtesy of Martijn Scheumie, Erasmus University Rotterdam) Retrieve documents: finds relevant documents (abstract+title) based on query Discover proteins: extract proteins discovered in the set of relevant abstracts 5. Link proteins ...

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Attributions: BioAID_DiseaseDiscovery_RatHumanMouseUniprotFilter