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HPO-UMLS-ConceptID mapping

Created: 2014-10-20 16:32:16

Generate HPO-Concept profiles via HPO-UMLS mappings. The result is a list of Concept IDs corresponding to Concept profiles for UMLS concepts that approximate HPO concepts. The output is a table of UMLS-ID, HPO- ID, COncept-ID rows.

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Taverna 2

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30?size=60x60 Nl Marco Roos

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Citations (1)

1. Rainer Winnenburg, Olivier Bodenreider, Coverage of Phenotypes in Standard Terminologies in Proceedings of the Joint Bio-Ontologies and BioLINK ISMB'2014 SIG session “Phenotype Day”, http://phenoday2014.bio-lark.org/pdf/5.pdf, 12 July 2014, http://mor.nlm.nih.gov/pubs/supp/2014-biolink_phenotype-rw/index.html


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  1. HPO-UMLS-ConceptID mapping

    Created by Marco Roos on Monday 20 October 2014 16:32:14 (UTC)



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Workflow Other workflows that use similar services (18)

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Taverna 2
Uploader
30?size=60x60 Nl Marco Roos

Workflow DatabaseID to ConceptID (7)

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Purpose: This workflow maps input Identifiers, common database identifiers, to the Concept Identifiers from the EMC ontology. Result: Concept Identifiers from the EMC ontology. Comments: Database: one of CAS, DRUG, etc. The supported databases are listed below (database, description, example). CAS, Chemical Abstracts Service registry number, 64-17-5. DRUG, Drug Bank, DB00316. AF, Affymetrix, 200007_at. CHEB, ChEBI, 16236. CHID, ChemIDplus, 0000050000. EG, Entrez-Gene, 3064. GO, Gene Ontol...

Created: 2012-06-25 | Last updated: 2014-07-14

Credits: User Marco Roos User Martijn Schuemie User Reinout van Schouwen Network-member BioSemantics

Taverna 2
Uploader
2286?size=60x60 Nl Reinout van Schouwen

Workflow Explain concept scores (7)

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Purpose of workflow: This workflow takes two concept ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the pe...

Created: 2012-02-07 | Last updated: 2014-07-14

Credits: User Reinout van Schouwen

Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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