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3655?size=60x60 Nl Magnus Palmblad
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Blob Example results from the UniProt Protein Protein Net...

Created: 2015-12-04 14:50:06

Credits: User Magnus Palmblad User Yassene

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Example results from the UniProt Protein Protein Network workflow (http://www.myexperiment.org/workflows/4778.html) on Apolipoprotein A-I (P02647). The purpose of the igraph graph is to check that the workflow ran OK. For further exploration and visualization of the network, one of the output files can be opened in Cytoscape or similar tool.

File type: PNG image

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71?size=60x60 Nl Katy Wolstencroft
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Blob Annotating Experimental Data

Created: 2015-12-03 08:31:02

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a tutorial about annotating experimental data with RightField

File type: PowerPoint 2007 presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Geo File for Annotation

Created: 2015-12-03 08:23:05

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an excel file to use in the RightField exercises in the BioSB Data Integration Course 2015

File type: application/excel

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71?size=60x60 Nl Katy Wolstencroft
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Blob Taverna Tutorial Data Integration NL 2015

Created: 2015-12-02 10:41:00 | Last updated: 2015-12-02 10:43:03

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial introduces you to using the Taverna workbench and shows you how you can use the Open PHACTS REST API to construct workflows over Open PHACTS services

File type: Adobe PDF

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4144?size=60x60 De Alexey Mints
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Blob PDF to BibTex

Created: 2015-10-13 15:11:36

Credits: User Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Tries to create a good bibtex file from PDF

File type: text/x-python

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Avatar Gb Robert Muetzelfeldt
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Blob Miniworld model in Systo JSON format

Created: 2015-05-22 15:32:23

Credits: User Robert Muetzelfeldt

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Miniworld model in Systo JSON format 

File type: Trident (Package)

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4295?size=60x60 Tn WAEL KALLEL
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Blob RIEMANN

Created: 2015-05-14 12:08:11

Credits: User WAEL KALLEL

License: Creative Commons Attribution-Share Alike 3.0 Unported License

GRASSHOPPER MATH

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4295?size=60x60 Tn WAEL KALLEL
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Blob DRAKE EQUATION

Created: 2015-05-14 12:07:10

Credits: User WAEL KALLEL

License: Creative Commons Attribution-Share Alike 3.0 Unported License

GRASSHOPPER MATH

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4295?size=60x60 Tn WAEL KALLEL
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Blob Booleen

Created: 2015-05-14 06:38:54

Credits: User WAEL KALLEL

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Booleen workflow with Grasshopper Math

File type: JPEG image

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4260?size=60x60 Ua Igor Lutsenko
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Blob Development of a general structure of the technologi...

Created: 2015-05-13 06:07:39

Credits: User Igor Lutsenko

License: Creative Commons Attribution-Share Alike 3.0 Unported License

At present, technological subsystems are usually hard-coded to produce a consumer product with a certain performance, and efficiency, which is defined either by the factory settings, or determined by the technologist's view on the mode, suitable for this or that equipment.This is predetermined by a number of factors, however, features of the architecture of the technological line, which prevent the possibility to independently vary the feed of raw and energy products, as well as the lack ...

File type: Adobe PDF

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4260?size=60x60 Ua Igor Lutsenko
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Blob Synthesis of the structure of the technological prod...

Created: 2015-05-13 06:01:12

Credits: User Igor Lutsenko

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Study of current controlled systems and scientific publications has shown that the architecture of controlled systems, related to the products conversion is based on the principle of austerity and, in general, does not provide the possibility of implementing a full parametric optimization.The paper proposes to develop a controlled conversion system from highly specialized systems, each of which performs only one function. The conversion system has the ability of independent conversion process...

File type: Adobe PDF

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4260?size=60x60 Ua Igor Lutsenko
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Blob Development of global efficiency criterion of target...

Created: 2015-05-13 05:56:35

Credits: User Igor Lutsenko

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Guaranteed maximization of financial returns from economic structures is only possible if all of its systems are focused on selecting target operations with maximum efficiency. Is it possible?Any system is created to enhance the value of output products of the system operation. Thus, two products: a consumer product that has value to the customer and the target product (value added), rewarding manufacturer of consumer value are formed at the output of the managed system.If the management syst...

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4260?size=60x60 Ua Igor Lutsenko
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Blob Determination of the value of the complex costs of t...

Created: 2015-05-13 05:43:03

Credits: User Igor Lutsenko

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Currently, the increase in financial returns from economic operations is constrained in view of the lack of a single efficiency criterion, which allows uniquely identify the business operation by their main feature - the possibility of obtaining the maximum value added (profit).One of the main scientific steps on the way to obtaining the formula of efficiency is developing the "resource intensity" indicator. The development of this indicator was based on the model of the deployed op...

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4260?size=60x60 Ua Igor Lutsenko
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Blob Identification of target system operations. 1. Deter...

Created: 2015-05-13 05:23:50 | Last updated: 2015-05-13 05:44:44

Credits: User Igor Lutsenko

License: Creative Commons Attribution-Share Alike 3.0 Unported License

It was found in the paper that the time frames of the studied system operation depend on the research objective. In cases when it comes to problems, related to the physical movement of the input and output products, limits of the study are defined by the time of the beginning of the movement of the first input product of the operation and ends with the time of issue of the last output product of the operation by the system. Time of completion of the physical movement of products is defined in...

File type: Adobe PDF

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3655?size=60x60 Nl Magnus Palmblad
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Blob Former countries

Created: 2015-05-05 12:43:01

Credits: User Magnus Palmblad User Arzu Tugce Guler

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File for mapping former countries to successor states using the ISO 3166 standards.

File type: Excel workbook

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3655?size=60x60 Nl Magnus Palmblad
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Blob ISO 3166-1 and ISO 3166-3

Created: 2015-05-05 12:39:15

Credits: User Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The ISO 3166-1 and ISO 3166-3 country codes

File type: Excel workbook

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4185?size=60x60 Nl Eleni
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Blob converter_nanopublications

Created: 2015-04-03 21:08:40

Credits: User Eleni Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

this script is part of the nanopublication workflow from pack http://www.myexperiment.org/packs/486.html

File type: application/x-ruby

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4185?size=60x60 Nl Eleni
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Blob create nanopublications

Created: 2015-04-03 21:05:56

Credits: User Eleni Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This ruby script creates nanopublications for the results of the prioritized gene list from pack : http://www.myexperiment.org/packs/486.html 

File type: application/x-ruby

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1217?size=60x60 Gb Alan Williams
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Blob Multiple selection

Created: 2015-03-31 11:23:55 | Last updated: 2015-03-31 11:37:25

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

An interaction page that allows multiple selections from a list of values.There is a single input port of depth one called selectionValuesThere is a single output port of depth one called answers

File type: htm

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Avatar Richard Marchese Robinson
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Blob myExperiment.test

Created: 2015-03-20 19:45:13 | Last updated: 2015-03-20 20:15:02

Credits: User Richard Marchese Robinson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This has no value other than allowing me to test myExperiment.org functionality!

File type: ZIP archive

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4280?size=60x60 Gb HARESCHANDRA JAYANETHTHI
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Blob A Preliminary Study of Ichthyofauna of Kukulugala Fo...

Created: 2015-03-04 15:02:07 | Last updated: 2015-03-04 15:03:52

Credits: User HARESCHANDRA JAYANETHTHI

License: Creative Commons Attribution-Share Alike 3.0 Unported License

the report discuss about Ichthyofauna diversity of Kukulugala rain forest patch 

File type: Adobe PDF

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4280?size=60x60 Gb HARESCHANDRA JAYANETHTHI
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Blob A new record of endangered Jonklaas Loach Lepidoceph...

Created: 2015-03-04 14:57:16

Credits: User HARESCHANDRA JAYANETHTHI

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Loaches are small fishes that adapted for bottom dwelling life. The bodies are sub-cylindrical with flattened ventral  aspect. They all belong to family Cobitidae of super family Cobitoidea (Loaches) under the Order Cypriniformes. They  have a sub-orbital spine on their cheeks below the eyes. The body is covered with minute cycloid scales and they possess three or more pairs of short barbels (Nelson, 1976). They do not have air bladder as they always settle ...

File type: Adobe PDF

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4280?size=60x60 Gb HARESCHANDRA JAYANETHTHI
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Blob SOME OBSERVATIONS OF Cnemaspis podihuna DERANIYAGALA...

Created: 2015-03-04 14:50:51

Credits: User HARESCHANDRA JAYANETHTHI

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The dwarf day gecko Cnemaspis podihuna is the smallest gecko recorded in Sri Lanka, and it is considered endemic to the island. According to the IUCN (International Union for Conservation of Nature) Red List it is an endangered species. This small gecko has been previously recorded from fourteen areas of dry mixed forest and wet forest.here we record this species from new localities: Buddhangala, Geelone, Malayadikanda, and Nilgala. The information avai...

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4280?size=60x60 Gb HARESCHANDRA JAYANETHTHI
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Blob SOME OBSERVATIONS OF NESTING BEHAVIOR OF RUFOUS-BELL...

Created: 2015-03-04 14:47:35

Credits: User HARESCHANDRA JAYANETHTHI

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This eagle’s nest building was observed while the author was walking halfway through the mountain passing a Dothaluya tea plantation at around 9 in the morningThe rufous-bellied eagle’s characteristic behaviour was observed at Sabaragamuwa Province in Gamthuna village in Kegalla District. Located close to Kegalle City limits, the village consists of three sub-villages. Udugama is the village at the highest point, in the middle is Medagama an...

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3791?size=60x60 Gb David De Roure
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Blob The Future of Scholarly Communications UKSG proofed ...

Created: 2014-11-06 00:16:53

Credits: User David De Roure

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The publisher's fulltext PDF is the final version of the paper. This is the Word version of the proof after revision, on which the published version was based, updated to include the figure and final page numbers.  

File type: Word 2007 document

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3791?size=60x60 Gb David De Roure
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Blob Four quadrant diagram

Created: 2014-11-05 23:58:21 | Last updated: 2014-11-06 00:37:54

Credits: User David De Roure

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Powerpoint file for Figure 1.  This figure is based on an earlier diagram by Dave Robertson of University of Edinburgh which appeared in the EPSRC grant proposal EP/J017728/1 SOCIAM: The Theory and Practice of Social Machines

File type: PowerPoint 2007 presentation

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3791?size=60x60 Gb David De Roure
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Blob The Future of Scholarly Communications UKSG fulltext...

Created: 2014-11-05 23:50:39 | Last updated: 2014-11-05 23:59:51

Credits: User David De Roure

License: Creative Commons Attribution-Share Alike 3.0 Unported License

De Roure, D, The future of scholarly communications, Insights, 2014, 27(3), 233–238; DOI: http://dx.doi.org/10.1629/2048-7754.171 Please acknowledge Insights: the UKSG journal as the place of first publication. 

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4260?size=60x60 Ua Igor Lutsenko
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Blob Deploed model of extremal system operation for solvi...

Created: 2014-10-27 21:01:16 | Last updated: 2015-05-13 05:46:35

Credits: User Igor Lutsenko

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The reduced, simplified registration mathematical model of the system operation, obtained by scaling the registration signals of the basic model and determining the sum of the reduced, integrated flow rates by the input and output of the system under study was constructed. The studies of this traditional, for today model have shown the problem, associated with the existing approach in operations identification. As a result of using the agent model and system approach, it was found that regist...

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30?size=60x60 Nl Marco Roos
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Blob Concept Profile of phenotype Chorea

Created: 2014-10-20 08:34:10

Credits: User Marco Roos Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Concept Profile generated from HPO term 'Chorea' via mapping to the corresponding UMLS phenotype concept.The profile contains ranked associations with Chorea conform mutual information content derived from co-occurrence in MedLine abstracts.Versions:HPO-UMLS mapping: Winnenburg, R., & Bodenreider, O. (2014). Coverage of Phenotypes in Standard Terminologies. In Proceedings of the ISMB’2014 SIG meeting “BioLINK.” Retrieved from http://phenoday2014.bio-lark.org/pdf/...

File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

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30?size=60x60 Nl Marco Roos
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Blob HTT-HPO concept profile match result

Created: 2014-10-20 08:26:32 | Last updated: 2014-10-20 08:35:28

Credits: User Marco Roos User Rajireturn Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Example Concept Profile of the Human Phenotype named 'Chorea' also referred to by as Human Phenotype Ontology concept HP_0002072.This file contains a list of concepts from the Human Phenotype Ontology, ranked according to Concept Profile Matching with the profile of huntingtin, the protein whose aberrant form is the cause of Huntington's Disease.Versions:HPO-UMLS mapping: Winnenburg, R., & Bodenreider, O. (2014). Coverage of Phenotypes in Standard Terminologies. In Proceedings...

File type: Excel workbook

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1217?size=60x60 Gb Alan Williams
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Blob XPath service

Created: 2014-10-03 15:36:07

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation on how to use the XPath service in Taverna

File type: Adobe PDF

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1217?size=60x60 Gb Alan Williams
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Blob WoRMS and OBIS services

Created: 2014-10-03 15:35:11

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation on how to use WoRMS and OBIS services in Taverna

File type: Adobe PDF

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1217?size=60x60 Gb Alan Williams
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Blob Working with BioVeL Portal

Created: 2014-10-03 15:34:08

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation on how to work with the BioVeL portal

File type: Adobe PDF

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1217?size=60x60 Gb Alan Williams
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Blob Using R in Taverna

Created: 2014-10-03 15:33:06

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation on how to use R in Taverna

File type: Adobe PDF

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1217?size=60x60 Gb Alan Williams
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Blob Tool service

Created: 2014-10-03 15:32:14

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a description of how to use the tool service in Taverna

File type: Adobe PDF

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1217?size=60x60 Gb Alan Williams
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Blob Using BiodiversityCatalogue

Created: 2014-10-03 15:31:21

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation on how to use BiodiversityCatalogue

File type: Adobe PDF

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1217?size=60x60 Gb Alan Williams
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Blob Taverna introduction

Created: 2014-10-03 15:29:44

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation introducing Taverna

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1217?size=60x60 Gb Alan Williams
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Blob Simple workflow

Created: 2014-10-03 15:28:51

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation about creating a simple workflow in Taverna

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1217?size=60x60 Gb Alan Williams
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Blob Nested workflows

Created: 2014-10-03 15:27:58

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation about nested workflows within Taverna

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1217?size=60x60 Gb Alan Williams
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Blob Introduction to myGrid

Created: 2014-10-03 15:27:06

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation introducing myGrid

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1217?size=60x60 Gb Alan Williams
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Blob Installing Taverna

Created: 2014-10-03 15:26:12

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation on how to install Taverna

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1217?size=60x60 Gb Alan Williams
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Blob Inputting data

Created: 2014-10-03 15:25:25

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation on how to input data into Taverna workbench

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1217?size=60x60 Gb Alan Williams
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Blob help

Created: 2014-10-03 15:24:36

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing help information for Taverna Biodiversity

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1217?size=60x60 Gb Alan Williams
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Blob Embedding workflows in your website

Created: 2014-10-03 15:23:49

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation about how to embed the running of workflows in your website, and examples.

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1217?size=60x60 Gb Alan Williams
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Blob Components

Created: 2014-10-03 15:22:22

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation about Taverna components

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1217?size=60x60 Gb Alan Williams
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Blob Checking Taverna installation

Created: 2014-10-03 15:21:35

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file containing a presentation on how to check your Taverna installation

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1217?size=60x60 Gb Alan Williams
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Blob Advanced Taverna

Created: 2014-10-03 15:20:26

Credits: Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A PDF file that contains a presentation about Advanced Taverna features

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1217?size=60x60 Gb Alan Williams
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Blob forester_1037.jar

Created: 2014-10-03 11:27:41 | Last updated: 2014-10-03 12:33:14

License: GNU Lesser General Public License (LGPL) 2.1

forester is a collection of open source libraries of Java software for phylogenomics and evolutionary biology research. For example, the tree viewer Archaeopteryx is based on forester. The forester website is at https://sites.google.com/site/cmzmasek/home/software/foresterThe current developer version is available through Google code at: http://code.google.com/p/forester/Author: Christian Zmasek, Sanford-Burnham Medical Research Instituteforester is Cop...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob TRE file

Created: 2014-09-30 09:34:51

Credits: User Antonio Velez-Espino User Andres Araujo

Attributions: Workflow Exploration of fishing scenarios

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains the time series of terminal run equivalents (TREs) of all ER indicator stocks.

File type: text/csv

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob TRE HR file

Created: 2014-09-30 09:32:41

Credits: User Antonio Velez-Espino User Andres Araujo

Attributions: Workflow Exploration of fishing scenarios

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains the time series of terminal run equivalent (TRE) ocean harvest rates of ER indicator stocks.

File type: text/csv

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