{"text_format":"2","workbook":"xls","n_sheets":13,"sheets":["Metadata Template","Matrix Template","Metadata Example","Matrix Example 1","Matrix Example 2","wksowlv0","wksowlv1","wksowlv2","wksowlv3","wksowlv4","wksowlv5","wksowlv6","wksowlv7"],"not_rendered":{"charts":0,"images":0,"macros":0,"external_links":1,"defined_names":3,"comments":49,"pivot_tables":0},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"run_cost":"one","rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Metadata Template","index":0,"n_rows":51,"n_cols":13,"rows_kept":51,"cut":false,"hidden":false,"merged":[[49,1,49,12],[50,1,50,12],[44,1,44,12],[45,1,45,12],[46,1,46,12],[47,1,47,12],[9,1,9,3],[10,1,10,12],[11,1,11,12],[43,1,43,12],[48,1,48,12]],"flags":["formulas_cached_only"]}
["# This is an excel template from the GEO website that has been modified to conform to the SEEK JERM (Just Enough Results Model) for transcriptomics. Fields in yellow are dropdown boxes of terms from relevant ontologies (created by RightField http://rightfield.org.uk)"]
["# Use this template for 3' or whole Gene expression studies (Affymetrix platform) when summarization probe set data will be provided in Matrix table format (click on additional worksheet tabs below)"]
["# Click the Metadata Example tab below to view a completed worksheet"]
["# Field names (in blue on this page) should not be edited. Hover over cells containing field names to view field content guidelines or, "]
["# CLICK HERE for the Field Content Guidelines on the GEO Web page."]
[]
["SERIES"]
["# This section describes the overall experiment."]
[]
["title",""]
["summary",""]
["overall design"]
["contributor",""]
["Assay SEEK ID",""]
["Assay Title",""]
["contributor (SEEK ID)"]
["SEEK Project",""]
["Experiment Class (assay Type)",""]
["Experiment Design type",""]
["Technology type",""]
["quality control type",""]
[]
["SAMPLES"]
["# The Sample names in the first column are arbitrary but they must match the column headers of the Matrix table (see next worksheet)."]
["# CLICK HERE to find the Affymetrix platform accession number (GPLxxxx)."]
[]
["Sample name","title","CEL file","source name","organism","characteristics:NCBI_ID","characteristics:Strain","characteristics:Genotype","characteristics:Phenotype","molecule","label","description","platform"]
["SAMPLE 1",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
["SAMPLE 2",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
["SAMPLE 3",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
["SAMPLE 4",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
["SAMPLE 5",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
["SAMPLE 6",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
["SAMPLE 7",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
["SAMPLE 8",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
["SAMPLE 9",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
["SAMPLE X",null,null,null,"organism",{"$nulls":4},"MaterialType","LabelCompound"]
[]
[]
["PROTOCOLS"]
["# This section includes protocols and fields which are common to all Samples."]
["# Protocols which are applicable to specific Samples or specific channels should be included in additional columns of the SAMPLES section instead."]
[]
["growth protocol"]
["treatment protocol"]
["extract protocol"]
["label protocol"]
["hyb protocol"]
["scan protocol"]
["data processing"]
["value definition"]

{"sheet":"Matrix Template","index":1,"n_rows":8,"n_cols":11,"rows_kept":8,"cut":false,"hidden":false,"merged":[],"flags":["formulas_cached_only"]}
["# Template for an Affymetrix matrix table submission."]
["# The ID_REF column should include the full list of probeset ids of the Affymetrix array (see Matrix Example tabs at bottom)"]
["# The sample names in the Matrix table (e.g. 'SAMPLE 1') must match the Sample name in the SAMPLES section of the Metadata file."]
["# The Matrix table should include summarized/scaled/normalized probeset data generated by GC-RMA, dCHIP, MAS 5.0, or whatever algorithm/software was used for primary analysis."]
["# If submitting MAS 5.0 data as a Matrix table, we recommend adding ABS_CALL and DETECTION P-VALUE columns to this template (see 'Matrix Example 2' tab at bottom)"]
["# P-values or other measurements can be added as additional columns for each sample (see 'Matrix Example 2' tab)"]
[]
["ID_REF","SAMPLE 1","SAMPLE 2","SAMPLE 3","SAMPLE 4","SAMPLE 5","SAMPLE 6","SAMPLE 7","SAMPLE 8","SAMPLE 9","SAMPLE X"]

{"sheet":"Metadata Example","index":2,"n_rows":37,"n_cols":12,"rows_kept":37,"cut":false,"hidden":false,"merged":[],"flags":["formulas_cached_only"]}
["SERIES"]
["title","Expression data from early Drosophila embryo "]
["summary","Morphogenesis of epithelial tissues relies on the precise developmental control of cell polarity and architecture. In the early Drosophila embryo, the primary epithelium forms during cellularisation, following a tightly controlled genetic programme where specific sets of genes are up-regulated. Some of them, for instance, control membrane invagination between the nuclei anchored at the apical surface of the syncytium. "]
["summary","We used microarrays to detail the global programme of gene expression underlying cellularisation and identified distinct classes of up-regulated genes during this process. "]
["overall design","Drosophila embryos were selected at successive stages of early development for RNA extraction and hybridization on Affymetrix microarrays. We sought to obtain homogeneous populations of embryos at each developmental stage in order to increase the temporal resolution of expression profiles. To that end, we hand-selected embryos according to morphological criteria at five time-points: before pole cell formation, i.e. before zygotic transcription (T0), during the slow phase (T1) and the fast phase (T2) of cellularisation and at the beginning (T3) and the end (T4) of gastrulation. "]
["contributor","Jane,Doe"]
["contributor","John,A,Smith"]
["Experiment Class (assay Type)"]
["Experiment Design type"]
["Technology type"]
["quality control type"]
[]
[]
["SAMPLES"]
["# The corresponding example matrix table is included in the next worksheet."]
["Sample name","title","CEL file","source name","organism","characteristics: tissue","characteristics: genotype","characteristics: age","molecule","label","description","platform"]
["Drosophila_T0-1","embryo at T0, biological rep1","Drosophila_T0-1.CEL","Drosophila embryos before nuclear cycle 9 (maternal transcripts)","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos younger than nuclear cycle 9, i.e. before zygotic genome activation.","GPL72"]
["Drosophila_T0-2","embryo at T0, biological rep2","Drosophila_T0-2.CEL","Drosophila embryos before nuclear cycle 9 (maternal transcripts)","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos younger than nuclear cycle 9, i.e. before zygotic genome activation.","GPL72"]
["Drosophila_T1-1","embryo at T1, biological rep1","Drosophila_T1-1.CEL","Drosophila embryos in slow phase of cellularisation","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos in slow phase of cellularisation.","GPL72"]
["Drosophila_T1-2","embryo at T1, biological rep2","Drosophila_T1-2.CEL","Drosophila embryos in slow phase of cellularisation","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos in slow phase of cellularisation.","GPL72"]
["Drosophila_T2-1","embryo at T2, biological rep1","Drosophila_T2-1.CEL","Drosophila embryos in fast phase of cellularisation","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos in slow phase of cellularisation.","GPL72"]
["Drosophila_T2-2","embryo at T2, biological rep2","Drosophila_T2-2.CEL","Drosophila embryos in fast phase of cellularisation","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos in slow phase of cellularisation.","GPL72"]
["Drosophila_T3-1","embryo at T3, biological rep1","Drosophila_T3-1.CEL","Drosophila embryos at beginning of gastrulation","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos in slow phase of cellularisation.","GPL72"]
["Drosophila_T3-2","embryo at T3, biological rep2","Drosophila_T3-2.CEL","Drosophila embryos at beginning of gastrulation","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos in slow phase of cellularisation.","GPL72"]
["Drosophila_T4-1","embryo at T4, biological rep1","Drosophila_T4-1.CEL","Drosophila embryos at end of gastrulation","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos in slow phase of cellularisation.","GPL72"]
["Drosophila_T4-2","embryo at T4, biological rep2","Drosophila_T4-2.CEL","Drosophila embryos at end of gastrulation","Drosophila melanogaster","dechorionated embryo","yellow white and Oregon R parents","embryos younger than nuclear cycle 9, i.e. before pole cells budding","total RNA","biotin","Gene expression data from embryos in slow phase of cellularisation.","GPL72"]
[]
[]
["PROTOCOLS"]
["growth protocol","30 min egg collections of OreR and yw flies at 25C were aged at room temperature (RT) according to the different temporal classes T0-T4. "]
["treatment protocol","Embryos were dechorionated with 50% bleach, put on a cover slip and covered with Halocarbon oil 27 (Sigma). Embryos of the appropriate stage were manually selected under the dissecting scope. Selected embryos were transferred to a basket, rinsed with PBS with 0,7% NaCl, 0,04% triton-X100 and placed on ice in the Trizol solution (GibcoBRL)."]
["extract protocol","Trizol extraction of total RNA was performed according to the manufacturer's instructions."]
["label protocol","Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)."]
["hyb protocol","Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400."]
["scan protocol","GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A."]
["data processing","The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100."]
["value definition","MAS5.0 signal intensity"]

{"sheet":"Matrix Example 1","index":3,"n_rows":55,"n_cols":11,"rows_kept":55,"cut":false,"hidden":false,"merged":[],"flags":["formulas_cached_only"]}
["# truncated example of a matrix table with signal estimates only"]
["# additional columns can be added for each sample/hyb (see 'Matrix Example 2' for illustration)"]
[]
["ID_REF","Drosophila_T0-1","Drosophila_T0-2","Drosophila_T1-1","Drosophila_T1-2","Drosophila_T2-1","Drosophila_T2-2","Drosophila_T3-1","Drosophila_T3-2","Drosophila_T4-1","Drosophila_T4-2"]
["141200_at","867.2","823.6","784.7","82.4","702.9","733","872.5","791.8","842.2","663.4"]
["141201_at","70.1","80.3","106.4","31.4","75.3","64.6","81.3","83.2","72.7","51.8"]
["141202_at","19.2","30.7","17.8","75.2","28.5","19.3","35.2","29.9","28.5","24"]
["141203_at","212.9","212","243.2","67.9","187.4","217.4","222.1","230","286","221"]
["141204_at","9.5","9.6","7.8","87.8","2.1","7.8","16.8","6.2","12.5","2.6"]
["141205_at","63.4","67.2","51.1","14","57.3","59.5","81.3","56.4","66.4","43"]
["141206_at","35.6","35.1","25","20.7","22.1","22.1","36.8","34.1","27.2","20.7"]
["141207_at","6.9","20.7","16.7","23.9","28.8","14.7","20.4","20","12.1","18.5"]
["141208_at","13.1","4.9","6.3","67.8","4.3","4.7","3.8","9.6","6.8","16.8"]
["141209_at","12.4","12.2","5","56.6","9","11.5","16.6","12.2","11.6","5"]
["141210_at","59.4","66.9","50.4","150.5","66.7","87","77.4","58","40.3","44"]
["141211_at","154.2","212.8","148","51.9","135.4","176.9","199.2","140.1","154.2","137.1"]
["141212_at","66.3","61.1","61.6","134.2","48.6","80.4","72.8","64.7","54.2","51.2"]
["141213_at","107.2","111.9","131.9","22.4","105.5","139.8","138","131.1","122.5","107.1"]
["141214_at","126.5","185.5","169.5","94.4","183.4","149.3","191.8","181.8","186.2","162"]
["141215_at","154.8","168.8","138.7","105.5","153.8","132.5","100","133.9","147.1","136.1"]
["141216_at","37.4","43.3","36.5","24.4","44","26.1","53.4","42.5","27.8","33.8"]
["141217_at","33.7","18.9","27.6","49.3","30.3","15","32.5","23.8","32.2","35.8"]
["141218_at","380.2","405","311.7","31.1","334.7","359.3","438.3","322.2","377.7","323"]
["141219_at","82.8","81.6","63.7","112.8","58.8","68.6","80.1","74.3","68","69.2"]
["141220_at","368.8","384.2","327.7","33.7","403.4","392.5","347.2","341.8","347.3","373.9"]
["141221_at","1257.1","1444.7","1371","36","1285.2","1060.1","1257.1","1026.9","1300.4","1219"]
["141222_at","1977.7","1984.5","1919","137.8","1560.2","1937.3","2363.2","2197.7","1878.4","2045.2"]
["141223_at","3096.7","2691.9","2732.2","40.7","2473.9","2608.1","2712.3","2636.9","2578","2935.6"]
["141224_at","985.2","1135.4","1034.5","37","1071.8","1079.9","1179.2","990.5","1082.7","1183.3"]
["141225_at","805.4","725.1","748.4","65.3","729.2","746.9","773.8","773.4","727.1","816.1"]
["141226_at","1215.1","1203.6","1295.6","121.4","1173.5","1151.6","1109","1225","1270","1258"]
["141227_at","1112.6","950.5","1190.6","119","989.6","981.6","1008.9","1002.5","922.3","1010.3"]
["141228_at","472.2","512.4","465","154.2","436.1","421.9","455.8","480.7","452","477.8"]
["141229_at","829.4","947.4","942","90.2","757.2","733.2","964.5","792.9","839.8","891"]
["141230_at","2155.2","1787.1","2395","44.3","2150.6","1955.3","1712.1","1934.7","2129.3","2027.3"]
["141231_at","376.1","391.4","348","110.3","357.6","373","312.9","373.3","353.3","368.7"]
["141232_at","1435.6","1159.8","1169.3","30","1006.5","1170.7","1458.7","1278.4","1062.6","1187.8"]
["141233_at","2130.6","1994.6","1984.1","104.5","1772.6","1990.3","1960.6","2185.2","1991.3","2365.5"]
["141234_at","463.9","478.2","548.1","22.4","489.8","526.8","502.3","527.1","521.3","558.1"]
["141235_at","1274.9","1215.9","1320.7","43.6","1156.9","1031.8","1224.8","1162","1192.8","1199.1"]
["141236_at","2104.9","2061.8","2492.4","38.5","2061.3","2016.3","1992.6","2011.4","2006.2","1944.6"]
["141237_at","2954.9","1907.4","1970.9","15.2","2022.3","2358.6","1811.1","2276.3","1384.7","1732.9"]
["141238_at","1363.8","1325.9","1151.6","40.8","1108.1","1340.7","1071.8","1264.1","1274.4","1519.8"]
["141239_at","2395.9","2425.8","2226.2","51","2114.6","2291.2","2381.6","2221.5","2391.7","2373.9"]
["141240_at","390.8","406.8","388","19.7","503.3","406.3","382","351.9","414.3","412"]
["141241_at","3155.1","3399.5","3532.9","60.9","2993.9","3381.2","5137.2","3308.4","3081.9","3058.9"]
["141242_at","1994.5","2024.5","2059.9","86.3","1760.6","1847.8","2079.8","2066","2000","2371.7"]
["141243_at","421.7","380.7","384.4","157.2","370.4","378.4","323.1","391.1","377.5","429.3"]
["141244_at","2175.2","1679.1","1872.8","90.2","1603.2","1705.8","1843","1857.1","1779.4","2199.1"]
["141245_at","2767.3","2421.4","2367.9","142.5","2073.5","2294.5","2244.7","2265.1","2217.5","2387.1"]
["141246_at","2540.1","2279.1","2062.3","130","1648.5","1708.6","2322","2063.5","1671.1","2263.9"]
["141247_at","288.6","305.3","338.2","108.1","308.1","314.4","303.3","355.5","335.8","347.3"]
["141248_at","425.7","427.4","438.8","15.2","478","449.2","411.1","411.5","399.6","426.4"]
["141249_at","2700.1","2293.5","2134.3","71.6","2199.6","2201.5","2485.9","2110.2","1966.3","2389.6"]
["141249_at","2700.1","2293.5","2134.3","71.6","2199.6","2201.5","2485.9","2110.2","1966.3","2389.6"]

{"sheet":"Matrix Example 2","index":4,"n_rows":54,"n_cols":31,"rows_kept":54,"cut":false,"hidden":false,"merged":[],"flags":["formulas_cached_only"]}
["# truncated example of a matrix table"]
["# The ABS_CALL and DETECTION P-VALUE columns are optional and included for example purposes only"]
[]
["ID_REF","Drosophila_T0-1","ABS_CALL","DETECTION P-VALUE","Drosophila_T0-2","ABS_CALL","DETECTION P-VALUE","Drosophila_T1-1","ABS_CALL","DETECTION P-VALUE","Drosophila_T1-2","ABS_CALL","DETECTION P-VALUE","Drosophila_T2-1","ABS_CALL","DETECTION P-VALUE","Drosophila_T2-2","ABS_CALL","DETECTION P-VALUE","Drosophila_T3-1","ABS_CALL","DETECTION P-VALUE","Drosophila_T3-2","ABS_CALL","DETECTION P-VALUE","Drosophila_T4-1","ABS_CALL","DETECTION P-VALUE","Drosophila_T4-2","ABS_CALL","DETECTION P-VALUE"]
["141200_at","867.2","P","0.000219","823.6","P","0.000219","784.7","P","0.000266","82.4","A","0.066865","702.9","P","0.000219","733","P","0.000219","872.5","P","0.000266","791.8","P","0.000266","842.2","P","0.000266","663.4","P","0.000219"]
["141201_at","70.1","P","0.001892","80.3","P","0.001892","106.4","P","0.013092","31.4","A","0.066865","75.3","P","0.001892","64.6","P","0.000805","81.3","P","0.019304","83.2","P","0.000959","72.7","P","0.00418","51.8","P","0.003067"]
["141202_at","19.2","A","0.250724","30.7","A","0.127645","17.8","A","0.175989","75.2","A","0.066865","28.5","A","0.162935","19.3","A","0.175989","35.2","A","0.267463","29.9","A","0.098054","28.5","A","0.11716","24","A","0.066865"]
["141203_at","212.9","P","0.002617","212","P","0.00418","243.2","P","0.003067","67.9","A","0.066865","187.4","P","0.002228","217.4","P","0.002228","222.1","P","0.002228","230","P","0.005643","286","P","0.001892","221","P","0.001354"]
["141204_at","9.5","A","0.397994","9.6","A","0.32083","7.8","A","0.339558","87.8","A","0.066865","2.1","A","0.660442","7.8","A","0.458816","16.8","A","0.47938","6.2","A","0.418069","12.5","A","0.127645","2.6","A","0.458816"]
["141205_at","63.4","P","0.024711","67.2","P","0.014937","51.1","P","0.035163","14","A","0.066865","57.3","P","0.014937","59.5","P","0.043968","81.3","P","0.043968","56.4","P","0.031336","66.4","P","0.021866","43","P","0.02786"]
["141206_at","35.6","P","0.019304","35.1","P","0.014937","25","M","0.05447","20.7","A","0.066865","22.1","A","0.11716","22.1","P","0.011447","36.8","P","0.017001","34.1","P","0.031336","27.2","P","0.003585","20.7","A","0.107301"]
["141207_at","6.9","A","0.561639","20.7","A","0.218983","16.7","A","0.52062","23.9","A","0.066865","28.8","A","0.234557","14.7","A","0.397994","20.4","A","0.479377","20","A","0.397994","12.1","A","0.397994","18.5","A","0.378184"]
["141208_at","13.1","A","0.088557","4.9","A","0.437646","6.3","A","0.318883","67.8","A","0.067627","4.3","A","0.437646","4.7","A","0.275462","3.8","A","0.911443","9.6","A","0.34162","6.8","A","0.181343","16.8","A","0.135974"]
["141209_at","12.4","P","0.043968","12.2","P","0.048995","5","A","0.267463","56.6","A","0.067627","9","A","0.175989","11.5","A","0.089405","16.6","A","0.204022","12.2","A","0.162935","11.6","A","0.138765","5","A","0.189687"]
["141210_at","59.4","P","0.031336","66.9","P","0.017001","50.4","M","0.05447","150.5","A","0.067627","66.7","P","0.02786","87","P","0.008689","77.4","A","0.081337","58","A","0.07383","40.3","A","0.089405","44","A","0.066865"]
["141211_at","154.2","P","0.011447","212.8","P","0.009985","148","P","0.013092","51.9","A","0.067627","135.4","P","0.011447","176.9","P","0.011447","199.2","P","0.02786","140.1","P","0.014937","154.2","P","0.011447","137.1","P","0.011447"]
["141212_at","66.3","P","0.043968","61.1","M","0.05447","61.6","P","0.031336","134.2","A","0.067627","48.6","P","0.014937","80.4","P","0.039365","72.8","M","0.05447","64.7","P","0.035163","54.2","P","0.02786","51.2","A","0.066865"]
["141213_at","107.2","A","0.138765","111.9","A","0.081337","131.9","M","0.05447","22.4","A","0.067627","105.5","A","0.07383","139.8","A","0.07383","138","A","0.107301","131.1","M","0.060419","122.5","A","0.07383","107.1","P","0.031336"]
["141214_at","126.5","P","0.014937","185.5","P","0.009985","169.5","P","0.014937","94.4","A","0.067627","183.4","P","0.011447","149.3","P","0.014937","191.8","P","0.017001","181.8","P","0.011447","186.2","P","0.014937","162","P","0.013092"]
["141215_at","154.8","P","0.001354","168.8","P","0.000805","138.7","P","0.000805","105.5","A","0.067627","153.8","P","0.000959","132.5","P","0.000805","100","P","0.003067","133.9","P","0.000562","147.1","P","0.001354","136.1","P","0.001354"]
["141216_at","37.4","P","0.019304","43.3","P","0.035163","36.5","P","0.039365","24.4","A","0.067627","44","P","0.013092","26.1","P","0.014937","53.4","A","0.089405","42.5","P","0.013092","27.8","P","0.019304","33.8","P","0.019304"]
["141217_at","33.7","A","0.218983","18.9","A","0.284747","27.6","A","0.32083","49.3","A","0.067627","30.3","A","0.11716","15","A","0.438361","32.5","A","0.267463","23.8","A","0.32083","32.2","A","0.162935","35.8","A","0.107301"]
["141218_at","380.2","P","0.013092","405","P","0.009985","311.7","P","0.019304","31.1","A","0.067627","334.7","P","0.008689","359.3","P","0.017001","438.3","P","0.02786","322.2","P","0.02786","377.7","P","0.017001","323","P","0.014937"]
["141219_at","82.8","P","0.001602","81.6","P","0.001354","63.7","P","0.002617","112.8","A","0.067627","58.8","P","0.003067","68.6","P","0.004863","80.1","P","0.004863","74.3","P","0.002617","68","P","0.003067","69.2","P","0.001602"]
["141220_at","368.8","P","0.000244","384.2","P","0.000244","327.7","P","0.000244","33.7","A","0.067627","403.4","P","0.000244","392.5","P","0.000244","347.2","P","0.000244","341.8","P","0.000244","347.3","P","0.000244","373.9","P","0.000244"]
["141221_at","1257.1","P","0.000244","1444.7","P","0.000244","1371","P","0.000244","36","A","0.067627","1285.2","P","0.000244","1060.1","P","0.000244","1257.1","P","0.001221","1026.9","P","0.001221","1300.4","P","0.001221","1219","P","0.000244"]
["141222_at","1977.7","P","0.000244","1984.5","P","0.000244","1919","P","0.000244","137.8","A","0.067627","1560.2","P","0.000244","1937.3","P","0.000244","2363.2","P","0.000244","2197.7","P","0.000244","1878.4","P","0.000244","2045.2","P","0.000244"]
["141223_at","3096.7","P","0.000244","2691.9","P","0.000244","2732.2","P","0.000244","40.7","A","0.067627","2473.9","P","0.000244","2608.1","P","0.000244","2712.3","P","0.000244","2636.9","P","0.000244","2578","P","0.000244","2935.6","P","0.000244"]
["141224_at","985.2","P","0.000244","1135.4","P","0.000244","1034.5","P","0.000244","37","A","0.067627","1071.8","P","0.000244","1079.9","P","0.000244","1179.2","P","0.000244","990.5","P","0.000244","1082.7","P","0.000244","1183.3","P","0.000244"]
["141225_at","805.4","P","0.000244","725.1","P","0.000244","748.4","P","0.000244","65.3","A","0.067627","729.2","P","0.000244","746.9","P","0.000244","773.8","P","0.000244","773.4","P","0.000244","727.1","P","0.000244","816.1","P","0.000244"]
["141226_at","1215.1","P","0.000244","1203.6","P","0.000244","1295.6","P","0.000244","121.4","A","0.067627","1173.5","P","0.000244","1151.6","P","0.000244","1109","P","0.000732","1225","P","0.000244","1270","P","0.000244","1258","P","0.000244"]
["141227_at","1112.6","P","0.000244","950.5","P","0.000244","1190.6","P","0.000244","119","A","0.067627","989.6","P","0.000244","981.6","P","0.000244","1008.9","P","0.000244","1002.5","P","0.000244","922.3","P","0.000244","1010.3","P","0.000244"]
["141228_at","472.2","P","0.000244","512.4","P","0.000244","465","P","0.000244","154.2","A","0.067627","436.1","P","0.000244","421.9","P","0.000244","455.8","P","0.000244","480.7","P","0.000244","452","P","0.000244","477.8","P","0.000244"]
["141229_at","829.4","P","0.000244","947.4","P","0.000244","942","P","0.000244","90.2","A","0.067627","757.2","P","0.000244","733.2","P","0.000244","964.5","P","0.000244","792.9","P","0.000244","839.8","P","0.000244","891","P","0.000244"]
["141230_at","2155.2","P","0.000244","1787.1","P","0.000244","2395","P","0.000244","44.3","A","0.067627","2150.6","P","0.000244","1955.3","P","0.000244","1712.1","P","0.000244","1934.7","P","0.000244","2129.3","P","0.000244","2027.3","P","0.000244"]
["141231_at","376.1","P","0.000244","391.4","P","0.000244","348","P","0.000244","110.3","A","0.067627","357.6","P","0.000244","373","P","0.000244","312.9","P","0.00293","373.3","P","0.000244","353.3","P","0.000244","368.7","P","0.000244"]
["141232_at","1435.6","P","0.000244","1159.8","P","0.000244","1169.3","P","0.000244","30","A","0.067627","1006.5","P","0.000244","1170.7","P","0.000244","1458.7","P","0.000244","1278.4","P","0.000244","1062.6","P","0.000244","1187.8","P","0.000244"]
["141233_at","2130.6","P","0.000244","1994.6","P","0.000244","1984.1","P","0.000244","104.5","A","0.067627","1772.6","P","0.000244","1990.3","P","0.000244","1960.6","P","0.000244","2185.2","P","0.000244","1991.3","P","0.000244","2365.5","P","0.000244"]
["141234_at","463.9","P","0.000244","478.2","P","0.000244","548.1","P","0.000244","22.4","A","0.067627","489.8","P","0.000244","526.8","P","0.000244","502.3","P","0.000244","527.1","P","0.000244","521.3","P","0.000244","558.1","P","0.000244"]
["141235_at","1274.9","P","0.000244","1215.9","P","0.000244","1320.7","P","0.000244","43.6","A","0.067627","1156.9","P","0.000244","1031.8","P","0.000244","1224.8","P","0.000244","1162","P","0.000244","1192.8","P","0.000244","1199.1","P","0.000244"]
["141236_at","2104.9","P","0.000244","2061.8","P","0.000244","2492.4","P","0.000244","38.5","A","0.067627","2061.3","P","0.000244","2016.3","P","0.000244","1992.6","P","0.000244","2011.4","P","0.000244","2006.2","P","0.000244","1944.6","P","0.000244"]
["141237_at","2954.9","P","0.000732","1907.4","P","0.000732","1970.9","P","0.000732","15.2","A","0.067627","2022.3","P","0.000244","2358.6","P","0.000732","1811.1","P","0.000732","2276.3","P","0.000244","1384.7","P","0.000732","1732.9","P","0.000732"]
["141238_at","1363.8","P","0.000244","1325.9","P","0.000244","1151.6","P","0.000244","40.8","A","0.067627","1108.1","P","0.000244","1340.7","P","0.000244","1071.8","P","0.000244","1264.1","P","0.000244","1274.4","P","0.000244","1519.8","P","0.000244"]
["141239_at","2395.9","P","0.000244","2425.8","P","0.000244","2226.2","P","0.000244","51","A","0.067627","2114.6","P","0.000244","2291.2","P","0.000244","2381.6","P","0.000244","2221.5","P","0.000244","2391.7","P","0.000244","2373.9","P","0.000244"]
["141240_at","390.8","P","0.000732","406.8","P","0.000244","388","P","0.000244","19.7","A","0.067627","503.3","P","0.000244","406.3","P","0.000244","382","P","0.000244","351.9","P","0.000244","414.3","P","0.000244","412","P","0.000244"]
["141241_at","3155.1","P","0.001221","3399.5","P","0.001221","3532.9","P","0.000732","60.9","A","0.067627","2993.9","P","0.001221","3381.2","P","0.001221","5137.2","P","0.001221","3308.4","P","0.001221","3081.9","P","0.001221","3058.9","P","0.001221"]
["141242_at","1994.5","P","0.000244","2024.5","P","0.000732","2059.9","P","0.000732","86.3","A","0.067627","1760.6","P","0.000244","1847.8","P","0.000244","2079.8","P","0.000732","2066","P","0.000244","2000","P","0.000732","2371.7","P","0.000244"]
["141243_at","421.7","P","0.000244","380.7","P","0.000244","384.4","P","0.000244","157.2","A","0.067627","370.4","P","0.000244","378.4","P","0.000244","323.1","P","0.000244","391.1","P","0.000244","377.5","P","0.000244","429.3","P","0.000244"]
["141244_at","2175.2","P","0.000244","1679.1","P","0.000732","1872.8","P","0.000732","90.2","A","0.067627","1603.2","P","0.000732","1705.8","P","0.000244","1843","P","0.001221","1857.1","P","0.000732","1779.4","P","0.000732","2199.1","P","0.000244"]
["141245_at","2767.3","P","0.000244","2421.4","P","0.000244","2367.9","P","0.000244","142.5","A","0.067627","2073.5","P","0.000244","2294.5","P","0.000244","2244.7","P","0.000244","2265.1","P","0.000244","2217.5","P","0.000244","2387.1","P","0.000244"]
["141246_at","2540.1","P","0.000732","2279.1","P","0.001221","2062.3","P","0.001221","130","A","0.067627","1648.5","P","0.000732","1708.6","P","0.000732","2322","P","0.000732","2063.5","P","0.000732","1671.1","P","0.000732","2263.9","P","0.000732"]
["141247_at","288.6","P","0.000244","305.3","P","0.000244","338.2","P","0.000244","108.1","A","0.067627","308.1","P","0.000244","314.4","P","0.000244","303.3","P","0.000244","355.5","P","0.000244","335.8","P","0.000244","347.3","P","0.000244"]
["141248_at","425.7","P","0.000244","427.4","P","0.000244","438.8","P","0.000244","15.2","A","0.067627","478","P","0.000244","449.2","P","0.000244","411.1","P","0.000244","411.5","P","0.000244","399.6","P","0.000244","426.4","P","0.000244"]
["141249_at","2700.1","P","0.000244","2293.5","P","0.000244","2134.3","P","0.000244","71.6","A","0.067627","2199.6","P","0.000244","2201.5","P","0.000244","2485.9","P","0.000244","2110.2","P","0.000244","1966.3","P","0.000244","2389.6","P","0.000244"]

{"sheet":"wksowlv0","index":5,"n_rows":16,"n_cols":3,"rows_kept":16,"cut":false,"hidden":true,"merged":[],"flags":["formulas_cached_only"]}
["INDIVIDUALS","<http://www.mygrid.org.uk/ontology/JERMOntology#organism>"]
["ontology","<http://www.mygrid.org.uk/ontology/JERMOntology>","<http://rest.bioontology.org/bioportal/virtual/download/1488>"]
["ontology","<http://mged.sourceforge.net/ontologies/MGEDOntology.owl>","<http://rest.bioontology.org/bioportal/virtual/download/1131>"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Bacillus_subtilis>","Bacillus subtilis"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Clostridium_acetobutylicum>","Clostridium acetobutylicum"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Enterococcus_faecalis>","Enterococcus faecalis"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Escherichia_coli>","Escherichia coli"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Lactococcus_lactis>","Lactococcus lactis"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Pseudomonas_fluorescens>","Pseudomonas fluorescens"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Pseudomonas_putida>","Pseudomonas putida"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Saccharomyces_cerevisiae>","Saccharomyces cerevisiae"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Streptococcus_pneumoniae>","Streptococcus pneumoniae"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Streptococcus_pyogenes>","Streptococcus pyogenes"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Streptomyces_coelicolor>","Streptomyces coelicolor"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Sulfolobus_solfataricus>","Sulfolobus solfataricus"]
["<http://www.mygrid.org.uk/ontology/JERMOntology#Trypanosoma_brucei>","Trypanosoma brucei"]

{"sheet":"wksowlv1","index":6,"n_rows":17,"n_cols":3,"rows_kept":17,"cut":false,"hidden":true,"merged":[],"flags":["formulas_cached_only"]}
["INDIVIDUALS","<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#LabelCompound>"]
["ontology","<http://mged.sourceforge.net/ontologies/MGEDOntology.owl>","<http://rest.bioontology.org/bioportal/virtual/download/1131>"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#_32P>"," 32P"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#_33P>"," 33P"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_350>","alexa 350"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_430>","alexa 430"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_488>","alexa 488"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_532>","alexa 532"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_546>","alexa 546"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_568>","alexa 568"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_594>","alexa 594"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_633>","alexa 633"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_660>","alexa 660"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#alexa_680>","alexa 680"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#biotin>","biotin"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#Cy3>","Cy3"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#Cy5>","Cy5"]

{"sheet":"wksowlv2","index":7,"n_rows":2,"n_cols":4,"rows_kept":2,"cut":false,"hidden":true,"merged":[],"flags":["formulas_cached_only"]}
["FREETEXT","<http://www.w3.org/2002/07/owl#Nothing>",null,"<http://www.mygrid.org.uk/ontology/JERMOntology#title>"]
["ontology","<http://www.mygrid.org.uk/ontology/JERMOntology>","<http://rest.bioontology.org/bioportal/virtual/download/1488>","DATA_PROPERTY"]

{"sheet":"wksowlv3","index":8,"n_rows":2,"n_cols":4,"rows_kept":2,"cut":false,"hidden":true,"merged":[],"flags":["formulas_cached_only"]}
["FREETEXT","<http://www.w3.org/2002/07/owl#Nothing>",null,"<http://www.mygrid.org.uk/ontology/JERMOntology#SEEKID>"]
["ontology","<http://www.mygrid.org.uk/ontology/JERMOntology>","<http://rest.bioontology.org/bioportal/virtual/download/1488>","DATA_PROPERTY"]

{"sheet":"wksowlv4","index":9,"n_rows":2,"n_cols":4,"rows_kept":2,"cut":false,"hidden":true,"merged":[],"flags":["formulas_cached_only"]}
["FREETEXT","<http://www.w3.org/2002/07/owl#Nothing>",null,"<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#has_title>"]
["ontology","<http://mged.sourceforge.net/ontologies/MGEDOntology.owl>","<http://rest.bioontology.org/bioportal/virtual/download/1131>","DATA_PROPERTY"]

{"sheet":"wksowlv5","index":10,"n_rows":2,"n_cols":4,"rows_kept":2,"cut":false,"hidden":true,"merged":[],"flags":["formulas_cached_only"]}
["FREETEXT","<http://www.w3.org/2002/07/owl#Nothing>",null,"<http://www.mygrid.org.uk/ontology/JERMOntology#SEEKID>"]
["ontology","<http://www.mygrid.org.uk/ontology/JERMOntology>","<http://rest.bioontology.org/bioportal/virtual/download/1488>","DATA_PROPERTY"]

{"sheet":"wksowlv6","index":11,"n_rows":19,"n_cols":3,"rows_kept":19,"cut":false,"hidden":true,"merged":[],"flags":["formulas_cached_only"]}
["INDIVIDUALS","<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#MaterialType>"]
["ontology","<http://mged.sourceforge.net/ontologies/MGEDOntology.owl>","<http://rest.bioontology.org/bioportal/virtual/download/1131>"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#cell>","cell"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#cell_lysate>","cell lysate"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#cytoplasmic_RNA>","cytoplasmic RNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#DNA>","DNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#genomic_DNA>","genomic DNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#molecular_mixture>","molecular mixture"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#nuclear_RNA>","nuclear RNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#organellar_DNA>","organellar DNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#organellar_RNA>","organellar RNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#organism_part>","organism part"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#polyA_RNA>","polyA RNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#protein>","protein"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#synthetic_DNA>","synthetic DNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#synthetic_RNA>","synthetic RNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#total_RNA>","total RNA"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#virus>","virus"]
["<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#whole_organism>","whole organism"]

{"sheet":"wksowlv7","index":12,"n_rows":2,"n_cols":4,"rows_kept":2,"cut":false,"hidden":true,"merged":[],"flags":["formulas_cached_only"]}
["FREETEXT","<http://www.w3.org/2002/07/owl#Nothing>",null,"<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#has_description>"]
["ontology","<http://mged.sourceforge.net/ontologies/MGEDOntology.owl>","<http://rest.bioontology.org/bioportal/virtual/download/1131>","DATA_PROPERTY"]