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Mohd Saberi

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Parameter Estimation for Simulation of Glycolysis Pa...

Created: 2012-07-24 04:46:49

Credits: Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

An improved differential evolution (DE) algorithm is proposed in this paper to optimize its performance in estimating the germane parameters for metabolic pathway data to simulate glycolysis pathway for Saccharomyces cerevisiae. This study presents an improved algorithm of parameter sensitivity test into the process of DE algorithm. The result of the improved algorithm is testifying to be supreme to the others estimation algorithms. The outcomes from this study promote estimating ...

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Mohd Saberi

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Identifying Metabolic Pathway within Microarray Gene...

Created: 2012-07-24 04:45:28

Credits: Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Extracting metabolic pathway that dictates a specific biological response is currently one of the important disciplines in metabolic system biology research. Previous methods have successfully identified those pathways but without concerning the genetic effect and relationship of the genes, the underlying structure is not precisely represented and cannot be justified to be significant biologically. In this article, probabilistic models capable of identifying the significant pathwa...

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Mohd Saberi

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Random Forest for Gene Selection and Microarray Data...

Created: 2012-07-24 04:44:00

Credits: Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A random forest method has been selected to perform both gene selection and classification of the microarray data. The goal of this research is to develop and improve the random forest gene selection method. Hence, improved gene selection method using random forest has been proposed to obtain the smallest subset of genes as well as biggest subset of genes prior to classification. In this research, ten datasets that consists of different classes are used, which are Adenocarcinoma, ...

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Mohd Saberi

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Optimized Local Protein Structure with Support Vecto...

Created: 2012-07-24 04:21:20

Credits: Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Protein includes many substances, such as enzymes, hormones and antibodies that are necessary for the organisms. Living cells are controlled by proteins and genes that interact through complex molecular pathways to achieve a specific function. These proteins have different shapes and structures which distinct them from each other. By having unique structures, only proteins able to carried out their function efficiently. Therefore, determination of protein structure is fundamental ...

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Mohd Saberi

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Prediction of Protein Residue Contact Using Support ...

Created: 2012-07-24 04:19:46

Credits: Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Prediction of protein residue contact is one of the important twodimensional prediction tasks in protein structure prediction. The residue contact map of protein contains information which represents three-dimensional conformation of protein. However the accuracy of the prediction is dependent on the type of protein information used to distinguish between contacts or noncontacts. According to CASP (Critical Assessment of Techniques of Protein Structure Prediction) the accuracy of ...

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pinarpink

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eScience-WF-Motifs-Consolidated-DataSet

Created: 2012-07-18 23:58:01

Credits: pinarpink

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The spreadsheet containing data consolidated by domain. Also contains al the charts that are generated over consolidated data.

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pinarpink

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eSCience-WF-Motifs-Wings-DataSet

Created: 2012-07-18 23:56:30

Credits: pinarpink

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The Dataset containing Wings workflows that are manually analyzed for the detection of motifs

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pinarpink

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eScience-WF-Motifs-Taverna-DataSet

Created: 2012-07-18 23:55:17

Credits: pinarpink

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The Dataset containing Taverna workflows that are manually analyzed for the detection of motifs

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David De Roure

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Presentation - Web Observatories

Created: 2012-07-18 19:52:23 | Last updated: 2012-07-18 20:14:36

Title: Web Observatories Speaker: David De Roure Event: Web Observatory and Discovery Informatics workshop Event URL: http://research.microsoft.com/en-us/events/wodi2012/ Location: Microsoft, Redmond, WA Date: Wednesday July 18, 2012 Formats: .pptx

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pinarpink

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eScience-2012-Workflow Motifs-Submission-Dataset

Created: 2012-07-18 12:36:14 | Last updated: 2012-07-18 23:58:59

The data sets that have been used for the manual analysis of motifs in Taverna-2 and Wings workflows.

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