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Uploader
3400?size=60x60 Gb Khalid Belhajjame
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Blob Log file of the execution of a Vistrails workflow

Created: 2012-07-10 08:08:14

Credits: User Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the log file obtained by executing the Vistrails workflow in http://www.myexperiment.org/workflows/3003.html?version=1

File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 15 times

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Vistrails
Uploader
3400?size=60x60 Gb Khalid Belhajjame

Workflow Gene to Pathways (Vistrails) (1)

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This is a Vistrails workflow that returns the pathways of a given gene ID. In doing so, it uses two kegg services.

Created: 2012-07-10

Credits: User Khalid Belhajjame

Taverna 2
Uploader
3400?size=60x60 Gb Khalid Belhajjame

Workflow Gene to Pathways (1)

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This is a Taverna workflow that given a gene ID fetches the corespondondings pathways. To do so, the workflow make use of two KEGG web services.

Created: 2012-07-09 | Last updated: 2012-07-10

Credits: User Khalid Belhajjame

Creator
3400?size=60x60 Gb Khalid Belhajjame
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Pack Gene_To_Pathway using Taverna and Vistrails


Created: 2012-07-09 18:17:35 | Last updated: 2012-07-10 08:15:19

This pack contains a workflow that use Kegg web service to fetch the pathways that corresponds to a given gene id. The pack contains two versions of the workflow, one using the Taverna workbench and the second was designed using the Vistrails workflow system. As well as the workflows specifications, the pack contains the log of execution (in XML) of the Vistrails workflow and the provenance traces (in RDF) of the Taverna execution using the OPM and Janus formats.

5 items in this pack

Comments: 0 | Viewed: 13 times | Downloaded: 7 times

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Taverna 2
Uploader
3772?size=60x60 Nl Kristina Hettne

Workflow List Concept Sets (3)

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Pupose: The workflow returns a list of all Concept Set IDs currently available in the database. The Concept Sets have an hierarchical structure that can be inferred by referring to the parent Concept Set ID.

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: User Kristina Hettne User Marco Roos User Reinout van Schouwen User Martijn Schuemie Network-member BioSemantics

Taverna 2
Uploader
3772?size=60x60 Nl Kristina Hettne

Workflow Get concept information (5)

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The workflow takes a (list of) concept ID(s) as input and returns the profile, ID, definition and name of the concept.

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: User Kristina Hettne User Reinout van Schouwen User Marco Roos User Martijn Schuemie Network-member BioSemantics

Taverna 2
Uploader
3772?size=60x60 Nl Kristina Hettne

Workflow Get Concept IDs (5)

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Purpose: The workflow retrieves the concepts within a concept set. The Web service/workflow currently returns no values (bug).

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: User Kristina Hettne User Reinout van Schouwen User Martijn Schuemie User Marco Roos Network-member BioSemantics

Taverna 2
Uploader
3633?size=60x60 Gb Bamdad Dashtban

Workflow Task Data Pattern (BeanShell) (1)

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This is a sample implementation of "Task Data" pattern intoduced workflowPatterns.com It defines a variable inside a Beanshell and uses the passed value through the processors input. Details: http://www.workflowpatterns.com/patterns/data/visibility/wdp1.php

Created: 2012-07-06

Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Social Machines - Research on the Web


Created: 2012-07-04 10:58:58 | Last updated: 2012-07-04 11:31:28

Plenary talk at Digital Humanities Summer School, Merton College, Oxford, 4 July 2012

1 item in this pack

Comments: 0 | Viewed: 9 times | Downloaded: 5 times

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Uploader
Avatar My Mohd Saberi
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Blob Metabolic Pathway Extraction Using Combined Probabil...

Created: 2012-07-04 06:59:13

Credits: User Mohd Saberi

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 Extracting metabolic pathway from microarray gene expression data that dictates a specific biological response is currently one of the important disciplines in system biology research. However due to the complexity of the global metabolic network and the importance to maintain the biological structure, this has become a greater challenge. Previous methods have successfully identified those pathways but without concerning the genetic effect and relationship of the genes, representation o...

File type: Adobe PDF

Comments: 0 | Viewed: 17 times | Downloaded: 10 times

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