Snapshot of the Pack: Supporting material for Roos et al., BMC Bioinformatics, SWAT4LS supplement (2009) (from myExperiment)

Pack Details

Title	Supporting material for Roos et al., BMC Bioinformatics, SWAT4LS supplement (2009)
Items	5
Created by	Marco Roos
Created at	15:45:32 on Friday, 15 May 2009
Last updated at	10:01:23 on Thursday, 11 August 2011

Description

Supporting material for BMC Bioinformatics, supplement for Semantic Web Applications and Tools for Life Science (2009)

Structuring and extracting knowledge for the support of hypothesis generation in molecular biology

Marco Roos , M. Scott Marshall , Andrew P. Gibson , Martijn Schuemie , Edgar Meij , Sophia Katrenko , Willem Robert van Hage , Konstantinos Krommydas, Pieter W. Adriaans

Acknowledgements

We thank the myGrid team and OMII-UK for their support in applying their e-Science tools, and Machiel Jansen for his contribution to the early development of AIDA. This work was carried out in the context of the Virtual Laboratory for e-Science program (VL-e) and the BioRange program. These programs are supported by BSIK grants from the Dutch Ministry of Education, Culture and Science (OC&W). Special thanks go to Bob Hertzberger who made the VL-e project a reality.

Downloaded Items (1)

Workflow: BioAID_EnirchBioModelWithProteinsFromText [ open local copy ]
Type: Taverna 1
Originally uploaded by: Marco Roos
Version: 7 (created on: 16/05/2009, last edited on: 16/05/2009)
Version uploaded by: Marco Roos

Added to pack by: Marco Roos (15/05/2009 @ 16:13:43)
Comment:

Workflow to extract protein names from medline and enrich BioAID proto-ontologies with the text mining results after conversion to RDF triples. Note that this workflow was made for demonstration purposes, not for concurrent use by multiple users. If you are interested in using this workflow, we would appreciate it if you would contact us such that we can collaborate.

Not Downloaded Items (4)

Packs within this pack (1)

Pack: AIDA toolbox [ click here to download this pack separately ]
Uploader: Marco Roos

Added to pack by: Marco Roos (15/05/2009 @ 16:05:47)
Comment:

The AIDA toolbox for knowledge management and knowledge extraction in a service oriented architecture.

External items (2)

Link - http://www.biomedcentral.com/1471-2105/10/S10/S9
Alternate link: none

Added to pack by: Marco Roos (23/03/2010 @ 19:07:19)
Comment:

BioMed Central back reference
RDF triple store with results from the BioAID workflow used in the publication for BMC Bioinformatics SWAT4LS special issue - http://snipurl.com/rdf-roosetal-bmcswat4ls2009
Alternate link: http://ws.adaptivedisclosure.org/openrdf-workbench/repositories/BMC_Bioinformatics_SWAT4LS_2009

Added to pack by: Marco Roos (15/05/2009 @ 20:15:26)
Comment:

RDF triple store with results from BioAID workflow for BMC Bioinformatics publication. The store is in fact a Sesame RDF repository. Because the triples are stored on disk for safety reasons, performance could be compromised.

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Added to pack by: Marco Roos (15/05/2009 @ 18:46:02)

Packs within this pack:	1
External items:	2
Items that can be viewed, but not downloaded:	0; ( 0 workflows, 0 files )
Items that cannot be viewed:	1

Workflows:	1
Files:	0

Snapshot of the Pack: Supporting material for Roos et al., BMC Bioinformatics, SWAT4LS supplement (2009)