Description
Supporting material for BMC Bioinformatics, supplement for Semantic Web Applications and Tools for Life Science (2009)
Structuring and extracting knowledge for the support of hypothesis generation in molecular biology
Marco Roos
,
M. Scott Marshall
,
Andrew P. Gibson
,
Martijn Schuemie
,
Edgar Meij
,
Sophia Katrenko
,
Willem Robert van Hage
, Konstantinos Krommydas,
Pieter W. Adriaans
Acknowledgements
We thank the myGrid team and OMII-UK for their support in applying their e-Science tools, and Machiel Jansen for his contribution to the early development of AIDA. This work was carried out in the context of the Virtual Laboratory for e-Science program (VL-e) and the BioRange program. These programs are supported by BSIK grants from the Dutch Ministry of Education, Culture and Science (OC&W). Special thanks go to Bob Hertzberger who made the VL-e project a reality.
Workflow to extract protein names from medline and enrich BioAID proto-ontologies with the text mining results after conversion to RDF triples. Note that this workflow was made for demonstration purposes, not for concurrent use by multiple users. If you are interested in using this workflow, we would appreciate it if you would contact us such that we can collaborate.