mustang provides structural alignment of two proteins

Created: 2008-08-20 14:41:21 Last updated: 2008-08-25 15:40:45

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This workflow experiments with the partial execution of jobs on a computational grid. The workflow elements "mustang" and "boxshade" are executed on grid nodes. Access to these resources is orchestrated with the plugin available on http://grid.inb.uni-luebeck.de. Please contact the author of this workflow for access permissions.

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Workflow Components

Inputs (2)

Name	Description
1st_protein_id	PDB identifier such as '1rpy'.
2nd_protein_id	PDB identifier such as '1rqq'

Processors (4)

Name	Type	Description
boxshade		Alignment pretty printer
mustang_2		Alignment of two protein structures
2nd_protein_structure	workflow	Retrieves second
1st_protein_structure	workflow	Retrieves first protein structure to investigate

Beanshells (0)

Outputs (5)

Name	Description
alignment_msf	Mustang provides a MSF-formatted sequence alignment that reflects the spatial assignment of residues.
alignment_overlay	A PDB flatfile with the two input structures being spatially aligned.
alignment_pretty	The program boxshade is used to convert the MSF-formatted alignment into a post script file.
1st_protein_structure	The 1st protein structure that was retrieved by its ID (with the nested workflow).
2nd_protein_structure	The 2nd protein structure that was retrieved by its ID (with the nested workflow).

Links (10)

Source	Sink
1st_protein_id	1st_protein_structure:pdbID
2nd_protein_id	2nd_protein_structure:pdbID
1st_protein_structure:pdbFlatFile	mustang_2:pdb_structure_one
2nd_protein_structure:pdbFlatFile	mustang_2:pdb_structure_two
mustang_2:structure_derived_alignment	boxshade:Multiple_Sequence_Alignment_as_MSF
1st_protein_structure:pdbFlatFile	1st_protein_structure
2nd_protein_structure:pdbFlatFile	2nd_protein_structure
boxshade:PostScript_file	alignment_pretty
mustang_2:combined_structures	alignment_overlay
mustang_2:structure_derived_alignment	alignment_msf

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Steffen MÃ¶ller

Information License

All versions of this Workflow are licensed under:

Information Version 3 (latest) (of 3)

Information Credits (1)

(People/Groups)

Steffen MÃ¶ller

Information Attributions (1)

(Workflows/Files)

Fetch PDB flatfile from RCSB server

Information Tags (5)

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Information Shared with Groups (1)

Computational Grid

Information Featured In Packs (1)

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Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (1)

Pharaxe

Information Statistics

4110 viewings

2669 downloads

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Citations (0)

None

Version History

In chronological order:

mustang

Created by Steffen MÃ¶ller on Wednesday 20 August 2008 14:41:21 (UTC)

Last edited by Steffen MÃ¶ller on Wednesday 20 August 2008 14:41:22 (UTC)
mustang

Created by Steffen MÃ¶ller on Wednesday 20 August 2008 14:41:21 (UTC)

Last edited by Steffen MÃ¶ller on Wednesday 20 August 2008 14:52:08 (UTC)

Revision comment:

Added manually some further description to the workflow itself since this option was not found in neither Taverna 1.7.1 or the myexperiment site.
mustang provides structural alignment of two proteins

Created by Steffen MÃ¶ller on Wednesday 20 August 2008 14:41:21 (UTC)

Last edited by Steffen MÃ¶ller on Monday 25 August 2008 15:40:46 (UTC)

Revision comment:

Better descriptions, added protein structures, removed email address from author ID.

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