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3375?size=160x160

Name: Saverio Vicario

Joined: Friday 25 November 2011 15:39:26 (UTC)

Last seen: Monday 11 July 2016 13:46:24 (UTC)

Email (public): Not specified

Website: http://www.itb.cnr.it/web/molecular-biodiversity/staff

Location: Bari, Italy

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0 Groups (admin)

2 Groups (member)

0 Files

6 Packs

21 Workflows

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Saverio Vicario has been credited 13 times

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Saverio Vicario is a Researcher in CNR -ITB, Bari since 2006 and in staff since 2011 ITB-BA. Bachelor degree in Zoology in "TorVergata" University (Rome) and PhD in ecology and evolutionary biology in Yale University. Its work produced 20 peer reviewed articles in molecular systematics and genome evolution. From a methodological point of view he has interest in developing and refining statistical methods within phylogenetic approach to study biodiversity in general and biodiversity observed by means of environmental sequencing. From a biological point of view has interest in the mode of evolution of mitochondrial genome and its contribution to organism adaptation. He participate to the Italian LifeWatch Network and he is member of the SIBE (Societa Italiana di Biologia Evoluzionistica) and BITS (Bioinformatics Italian Society).


Other contact details:

Not specified

Interests:

Not specified

Field/Industry: molecular evolution for biodiversity

Occupation/Role(s): researcher

Organisation(s):

Consiglio Nazionale delle Ricercher - Istituto di Tecnologie Biomediche

 

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Contents (click to expand/contract)
Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Evaluate MrBayes Run on convergence, model... (1)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2014-07-04

Credits: User Saverio Vicario

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow RetrivingJob1 (1)

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Get Retrieve result of a job for which you possess the ID

Created: 2014-06-17 | Last updated: 2014-06-24

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Launch_GUI (3)

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No description

Created: 2013-12-13 | Last updated: 2014-04-09

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow MrBayesPPtest (13)

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robust connection

Created: 2013-12-11 | Last updated: 2014-11-27

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow TreeVisualizationItol (11)

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robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow ConsensusTree (15)

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robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow ConVergenceTreeDiagnosticGeoKS (15)

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robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow MrBayes (10)

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using slow paced JSTasync 1

Created: 2013-12-11 | Last updated: 2014-06-19

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow SelectingEvolutionaryModelWithPartFinder (19)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-12-11 | Last updated: 2014-12-01

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow JSTWebDav3Input (3)

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Some Broken

Created: 2013-12-11 | Last updated: 2013-12-17

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow JSTAsync1 (6)

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slow down job retrival to one every 60 sec

Created: 2013-12-11 | Last updated: 2014-06-19

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow JSTAsync2 (7)

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slow down loops to 60 sec

Created: 2013-12-11 | Last updated: 2014-06-19

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Partitioning environmental sequencing data... (5)

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Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and ...

Created: 2013-05-07 | Last updated: 2015-06-12

Credits: User Saverio Vicario

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Partitioning environmental sequencing data... (3)

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Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and ...

Created: 2013-05-07 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Infererence: Input R... (3)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Inference: Select Mo... (3)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-07-04

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Select Model (12)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-06-13

Credits: User Saverio Vicario User Bachirb User Giacinto Donvito

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Inference: Select Mo... (4)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-07-04

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Infererence: Evaluat... (7)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Input Ready (8)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-04-13

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Select Model For Me with components (21)

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Phylogenetic inference with MrBayes. The the model of evolution is defined with the help of PartitionFinder, inference and test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test)

Created: 2013-02-20 | Last updated: 2014-01-31

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

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