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2013-10-10 12:28:20.827 UTC phylogenetic infernece in newick format of the sequences ( or clusters of sequences ) present in the different samples. Internal label are overwritten by the service. 2013-05-07 08:24:01.214 UTC randomization00 1000 2013-04-11 11:01:10.921 UTC insert an integer to define number of randomization to perform to estimate significance of the difference found across groups. Good rule of the thumb randomization = nlog(n) where n is the number of sequences. 2013-05-07 08:29:40.598 UTC qparamHill00 float larger than zero, define the diversity index to be used following Hill parametrization. 1 is shannon index 2013-04-11 11:02:20.737 UTC 1 2013-04-11 11:02:16.426 UTC outputPrefix00 myDiversity 2013-04-11 11:03:07.610 UTC Prefix for all outputfiles 2013-04-11 11:03:23.959 UTC xmloutputType00 phyloxml 2013-04-11 11:05:01.158 UTC Type of xml summary output type: two possible standard are used nexml and phyloxml. T At the moment phyloxml is fully supported while nexml have some possible error 2013-04-11 11:04:52.583 UTC GroupFile00SampleFile00JobID0 integer that identify the job on the farm. Use it with the service centre to find out bug or crash of the job 2013-05-07 09:02:18.812 UTC OutputPath0 URL 2013-05-07 08:57:59.620 UTC Link to folder with all details of estimation 2013-05-07 08:57:16.686 UTC StandardOuput0 URL 2013-05-07 08:57:54.927 UTC URL of the HTML file of summary 2013-05-07 08:57:48.151 UTC Log0Status0FormInput2PhyloHNrandomization0qparamHill0XMLoutputType0output_prefix0tree0sample0group0output00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity tree 0 'text/plain' java.lang.String true sample 0 'text/plain' java.lang.String true group 0 text/plain java.lang.String true Nrandomization 0 text/plain java.lang.String true qparamHill 0 text/plain java.lang.String true output_prefix 0 text/plain java.lang.String true XMLoutputType 0 text/plain java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2013-04-11 11:34:07.948 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeServiceNamevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity PhyloH net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFile_name_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity group net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFile_name_value_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity sample net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFile_name_value_2value00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity tree net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeJSTWebDav3InputFile_name0InputBody0Token0REST_Service_redirection00net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org JSTInteraction JSTWebDav3Input 3 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeJSTWebDav3Input_2File_name0Token0InputBody0REST_Service_redirection00net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org JSTInteraction JSTWebDav3Input 3 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeJSTWebDav3Input_3File_name0Token0InputBody0REST_Service_redirection00net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org JSTInteraction JSTWebDav3Input 3 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRandGenout00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity out 0 0 workflow org.embl.ebi.escience.scuflworkers.java.TestSometimesFails UserNameHere 2013-05-27 13:52:26.399 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeJSTAsync1Argument0Name0Output_Path00StandardError00Standardoutput00Status00JobID00net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org JSTInteraction JSTAsync1 4 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFormInput2PhyloHNrandomizationrandomizationFormInput2PhyloHqparamHillqparamHillFormInput2PhyloHXMLoutputTypexmloutputTypeFormInput2PhyloHoutput_prefixoutputPrefixFormInput2PhyloHtreeJSTWebDav3InputREST_Service_redirectionFormInput2PhyloHsampleJSTWebDav3Input_2REST_Service_redirectionFormInput2PhyloHgroupJSTWebDav3Input_3REST_Service_redirectionJSTWebDav3InputFile_nameFile_name_value_2valueJSTWebDav3InputInputBodyTreeFileJSTWebDav3InputTokenRandGenoutJSTWebDav3Input_2File_nameFile_name_value_1valueJSTWebDav3Input_2TokenRandGenoutJSTWebDav3Input_2InputBodySampleFileJSTWebDav3Input_3File_nameFile_name_valuevalueJSTWebDav3Input_3TokenRandGenoutJSTWebDav3Input_3InputBodyGroupFileJSTAsync1ArgumentFormInput2PhyloHoutputJSTAsync1NameServiceNamevalueJobIDJSTAsync1JobIDOutputPathJSTAsync1Output_PathStandardOuputJSTAsync1StandardoutputLogJSTAsync1StandardErrorStatusJSTAsync1Status f0802c3d-db78-411b-b3a9-be5785c187ad 2013-05-07 12:11:17.325 UTC 2b45cd9d-280c-4105-8b32-27183d7ac0e1 2013-10-10 09:57:24.777 UTC a17eb654-0171-4df2-ac36-4acc339384db 2013-04-26 18:33:51.919 UTC b0dc1429-1970-4494-9f8c-f6d0be299c8a 2013-04-11 11:34:13.925 UTC saverio vicario giacinto Donvito alfonso monaco 2013-05-07 08:11:03.170 UTC 7fab7e35-85cf-4e21-bc13-995be24761e2 2013-05-07 08:30:14.602 UTC d86c0796-3452-4309-8749-e9c00317028e 2014-01-22 22:56:00.235 UTC Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and a graphical and tabular representation of the contribution of each branch of the tree to the differentiation across groups of sample. Further as side results the WF gives the tree annotated with the per branch contribution to the differentiation across groups of sample in nexml or phyloxml format and all files necessary to produce ex.novo the annotated tree on itol, giving the possibility to the user to add taxonomic information. 2013-05-07 08:19:04.918 UTC bf46fc7f-02db-4866-af8d-f0217d02859e 2013-05-07 10:03:40.766 UTC 3ba5b4e6-397d-44a3-971f-ce1d0dbf8811 2013-05-07 10:09:33.587 UTC 2ffffdc3-1ec7-4236-8924-de5a7e170a5a 2013-10-17 14:24:09.552 UTC 248189b3-9129-40d2-b887-56c4137bafeb 2013-05-07 09:54:27.423 UTC c41c6bc4-33ac-40f5-bd8b-93047b8dc1a9 2013-04-11 11:07:14.583 UTC 501d8973-ccd0-4ee8-8abb-c7933b6387e3 2014-04-13 19:36:36.298 UTC 09241519-d83d-4b4e-944c-e25e5b4bb307 2013-05-07 09:02:29.484 UTC a187676a-3585-4f1f-acba-3e2287ebc8f3 2013-10-10 12:15:24.438 UTC 62da11d6-4837-485e-b498-1efed5a440ee 2013-10-21 13:14:28.246 UTC 8c4b43af-b067-44db-98df-ccb3b4550827 2014-04-13 19:36:11.707 UTC 4b525f2a-0c9e-49b3-9ec1-276bb2259638 2014-01-22 22:57:35.796 UTC 97fad68f-684e-43ba-b39c-8716ade2e1ad 2013-05-07 08:19:06.317 UTC 68263617-e03a-4e96-b0aa-c1ca61c0e3ab 2013-10-10 12:32:16.251 UTC dac90b33-d05c-4463-945b-0cecc809961a 2013-10-10 12:28:26.647 UTC 96567df7-67fb-41eb-86a5-eae0224dc36b 2013-04-11 11:19:54.223 UTC Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH with parsing Qiime 2013-10-10 09:57:41.468 UTC 8efa6403-e217-4d12-b8d3-2e10ab935b9e 2014-01-23 09:53:38.177 UTC 25a163e6-1b61-49a7-b5d0-154324c4027a 2013-10-10 12:19:25.582 UTC d9fd7031-03da-491c-b267-565abaa2a5f7 2013-10-10 09:57:43.472 UTC 7b6d374e-216b-4670-a68e-70afa004f63a 2013-04-26 19:47:07.79 UTC 237f807b-b5e8-4702-9420-69bfceb55bbf 2013-10-10 12:19:04.442 UTC 058e75ba-c111-42b7-b0d7-44629e631e23 2013-05-07 10:07:59.668 UTC 56136ddd-1a55-44a5-948d-cf2994aeaa6e 2013-05-07 09:59:22.755 UTC