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Name: Saverio Vicario

Joined: Friday 25 November 2011 15:39:26 (UTC)

Last seen: Monday 11 July 2016 13:46:24 (UTC)

Email (public): Not specified

Website: http://www.itb.cnr.it/web/molecular-biodiversity/staff

Location: Bari, Italy

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Saverio Vicario has been credited 13 times

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Saverio Vicario is a Researcher in CNR -ITB, Bari since 2006 and in staff since 2011 ITB-BA. Bachelor degree in Zoology in "TorVergata" University (Rome) and PhD in ecology and evolutionary biology in Yale University. Its work produced 20 peer reviewed articles in molecular systematics and genome evolution. From a methodological point of view he has interest in developing and refining statistical methods within phylogenetic approach to study biodiversity in general and biodiversity observed by means of environmental sequencing. From a biological point of view has interest in the mode of evolution of mitochondrial genome and its contribution to organism adaptation. He participate to the Italian LifeWatch Network and he is member of the SIBE (Societa Italiana di Biologia Evoluzionistica) and BITS (Bioinformatics Italian Society).


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Field/Industry: molecular evolution for biodiversity

Occupation/Role(s): researcher

Organisation(s):

Consiglio Nazionale delle Ricercher - Istituto di Tecnologie Biomediche

 

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Taverna 2
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Project Biovel

Workflow MSA-PAD Genome Mode Multiple DNA Sequence ... (1)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform a Multiple DNA sequence alignment coding for multiple/single protein domains Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description This workflow is used to submit the multip...

Created: 2014-12-05

Credits: User Bachirb User Giacinto Donvito User Pasquale Notarangelo User Saverio Vicario User Graziano Pesole User Alfonso Monaco

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Project Biovel

Workflow MSA-PAD Gene Mode: DNA Multiple Sequence A... (1)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform a Multiple DNA sequence alignment coding for multiple/single protein domains Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description This workflow is used to submit the multip...

Created: 2014-12-05

Credits: User Bachirb User Giacinto Donvito User Pasquale Notarangelo User Saverio Vicario User Graziano Pesole User Alfonso Monaco

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Workflow MsaPAD: Multiple Sequence Alignment - Inpu... (2)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform a Multiple DNA sequence alignment coding for multiple/single protein domains Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description This workflow is used to submit the multip...

Created: 2014-07-30 | Last updated: 2015-06-12

Credits: User Bachirb User Giacinto Donvito User Pasquale Notarangelo User Saverio Vicario User Graziano Pesole

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Taverna 2
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3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Infererence: Evaluat... (7)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

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Taverna 2
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3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Inference: Select Mo... (3)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-07-04

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Workflow

Taverna 2
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3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Inference: Select Mo... (4)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-07-04

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Workflow

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Infererence: Input R... (3)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Workflow

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Evaluate MrBayes Run on convergence, model... (1)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2014-07-04

Credits: User Saverio Vicario

Workflow

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Select Model (12)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-06-13

Credits: User Saverio Vicario User Bachirb User Giacinto Donvito

Workflow

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Input Ready (8)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-04-13

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Workflow

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Partitioning environmental sequencing data... (5)

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Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and ...

Created: 2013-05-07 | Last updated: 2015-06-12

Credits: User Saverio Vicario

Workflow

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Partitioning environmental sequencing data... (3)

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Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and ...

Created: 2013-05-07 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito

Workflow

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Select Model For Me with components (21)

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Phylogenetic inference with MrBayes. The the model of evolution is defined with the help of PartitionFinder, inference and test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test)

Created: 2013-02-20 | Last updated: 2014-01-31

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

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