Saverio Vicario is a Researcher in CNR -ITB, Bari since 2006 and in staff since 2011 ITB-BA. Bachelor degree in Zoology in "TorVergata" University (Rome) and PhD in ecology and evolutionary biology in Yale University. Its work produced 20 peer reviewed articles in molecular systematics and genome evolution. From a methodological point of view he has interest in developing and refining statistical methods within phylogenetic approach to study biodiversity in general and biodiversity observed by means of environmental sequencing. From a biological point of view has interest in the mode of evolution of mitochondrial genome and its contribution to organism adaptation. He participate to the Italian LifeWatch Network and he is member of the SIBE (Societa Italiana di Biologia Evoluzionistica) and BITS (Bioinformatics Italian Society).

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Field/Industry: molecular evolution for biodiversity

Occupation/Role(s): researcher

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Consiglio Nazionale delle Ricercher - Istituto di Tecnologie Biomediche

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Phylogenetic Diversity

Created: 2014-05-19 12:29:08 | Last updated: 2014-05-19 13:13:10

Tools to study diversity across sample and environment taking account the phylogenetic structure of the observation

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Saverio Vicario

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BayesianPhylogeneticInference

Created: 2013-12-11 13:40:50 | Last updated: 2014-05-19 13:01:14

The family propose different steps to perform a bayesian phylogenetic inference

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Saverio Vicario

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JSTInteraction

Created: 2013-12-11 13:12:49 | Last updated: 2014-06-17 15:20:46

Allow to interact with JST web service and JST Webdav server to access service of biodiversity catalogue https://www.biodiversitycatalogue.org/services/31

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Analysis of environmental sequences

Created: 2013-05-07 09:07:57 | Last updated: 2013-05-07 12:14:57

The pack should allow to analysis the differentiation across groups of samples of biological sequence

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Perform Short Bayesian Phylogenetic Inference

Created: 2013-02-20 15:07:21 | Last updated: 2013-08-21 16:09:33

The Pack contain 3 workflows that perform and validate bayesian phylogenetic inference that differ from the kind of input. The pack is called short because the worlflow require that the user need to keep taverna engine always on for the the time of the analysis. This could be quite problematic for large analysis. In this case search help in the "Perform Long Bayesian Phylogenetic Inference" packIn this pack there are 3 workflows:1) User locally formatted input file (for details in n...

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Perform Long Bayesian Phylogenetic Inference

Created: 2013-02-20 14:59:31 | Last updated: 2015-06-12 13:48:46

Phylogenetic inference with mrbayes requires long calculation. So is not possible to keep the taverna engine on for the time required for the analysis. The solution is to break the Workflow in 2 part: before and after submission to mrbayes service.In this pack there are 3 workflows for submission:1) User locally formatted input file (for details in nexus format for mrbayes http://mrbayes.sourceforge.net/wiki/index.php/Manual_3.2)2) User is helped by a GUI (graphical user interface) to define ...

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