1. Home
  2. Users
  3. Barend

Nl User: Barend

728?size=160x160

Name: Barend

Joined: Thursday 16 July 2009 11:09:26 (UTC)

Last seen: Friday 18 March 2011 09:17:59 (UTC)

Email (public): barend.mons [at] nbic.nl

Website: http://www.biosemantics.org

Location: Leiden, Netherlands

28 Friends

6 Groups (admin)

17 Groups (member)

2 Files

0 Favourites

Barend has been credited 2 times

Barend has an average rating of:

0.0 / 5

(0 ratings in total)

for their items

The reason I joined MyExperiment is that I believe that such an environment, when properly supported by in-text semantic technologies could drive international collaboration, e-science, but notably community annotation of dispersed biological resources, that is why we started the Concept Web Alliance, with several of the founders of MyExperiment at the table.

Since October 2009 I am the head of the BioAssist Programme of NBIC

See my wikipeople page here: proteins.wikiprofessional.org/index.php/Concept:101668678

Please note this is a staging server, we will move to production soon and the link may be broken

 

 


Other contact details:

Not specified

Interests:

My personal interest is in concept-based information management, especially for international community annotation

Field/Industry: Bioinformatics, computational biology, Concept Web

Occupation/Role(s): Associate Professor, Head of the BioAssist Program of NBIC

Organisation(s):

Leiden University Medical Center (LUMC)
Netherlands Bioinformatics Center (NBIC)

 

Groups that Barend owns

Owner
728?size=80x80 Nl Barend
Show View

Network-member Concept Web Alliance (general)

Unique name: CWA
Created: Monday 27 July 2009 12:48:15 (UTC)

This group aims to connect all people actively interested or participating in the new initiative, the Concept Web Alliance.(CWA) the Aim of the CWA is: “To enable an open collaborative environment to jointly address the challenges associated with high volume scholarly and professional data production, storage, interoperability and analyses for knowledge discovery.“ The 'Magnet Gro...

4 shared items   |   2 announcements

Members (57):

Tags:
Owner
728?size=80x80 Nl Barend
Show View

Network-member BioAssist II Taskforce for BioBanking Plat...


Created: Friday 31 July 2009 11:53:06 (UTC)

This group has been set up to exchange ideas, documents, workflows and news about the BioBanking Platform of NBIC in the The Netherlands. However, international members of the Concept Web Alliance or the BBMRI initiatives are very welcome to join. It will keep you updated on all technical developments regarding data harmonization and other aspects of BioBanking. Colleagues involved in the P3G ...

2 shared items   |   2 announcements

Members (32):

This Group has not been tagged yet!

Latest announcement:: Visit Paris to discuss WikiPedia Scholar with Segolene and Denis

Owner
728?size=80x80 Nl Barend
Show View

Network-member CWA working group 1.7: sustainability / pu...


Created: Sunday 02 August 2009 19:10:26 (UTC)

This group is responsible for fundraising from public resources. Please view the XLS file with currently pursued fundignopportunities. Everyone is invited to join this group and suggest funding opportunities.

1 shared item   |   0 announcements

Members (10):

This Group has not been tagged yet!

Owner
728?size=80x80 Nl Barend
Show View

Network-member MyExperiment, WikiPeople and VIVO


Created: Monday 17 August 2009 13:15:03 (UTC)

12.00 Normal 0 false false false EN-US X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-style-parent:"";...

1 shared item   |   0 announcements

Members (12):

This Group has not been tagged yet!

Owner
728?size=80x80 Nl Barend
Show View

Network-member Discussion SwissProt to triples


Created: Wednesday 14 October 2009 18:56:58 (UTC)

12.00 Normal 0 false false false EN-US X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-style-parent:"";...

0 shared items   |   1 announcements

Members (8):

This Group has not been tagged yet!

Latest announcement:: does anyone know why the extra syntax is there in text (due to word 7 ?) and how I can remove it ?

Owner
728?size=80x80 Nl Barend
Show View

Network-member NBIC-BioAssist II (all people)


Created: Friday 23 October 2009 07:13:45 (UTC)

This group serves as an overview of all people involved directly or indirectly in the BioAssist Program of the Netherlands Bioinformatics Centre. BioAssist-II (2009 and beyond) is headed by Barend Mons The management team is composed as follows: Marcel Reinders, Co-Program Leader Rob Hooft, Chief Technology Officer (CTO) Christine Chichester Chief Information Officer (CIO) Marc van Driel (...

2 shared items   |   1 announcements

Members (10):

This Group has not been tagged yet!

Latest announcement:: Despautism

Other Groups that Barend belongs to

Owner
231?size=80x80 M. Scott Marshall
Show View

Network-member CWA Working Group 2.6: Storage and mainten...


Created: Friday 27 November 2009 19:39:12 (UTC)

A fundamental challenge facing the Semantic Web and the Concept Web Alliance is making essential information available from triple stores. The scale of the information that users eventually want to share and access is generally larger than will fit into a single triple store. Also, it is impossible to centralize all knowledge in a CWA knowledge warehouse. For this reason, federation of data sou...

0 shared items   |   0 announcements

Members (7):

Tags:
Owner
4398?size=80x80 Nl Rob Hooft
Show View

Network-member BioAssist II Taskforce for e-science

Unique name: e
Created: Saturday 24 October 2009 11:20:06 (UTC)

Taskforce of BioAssist, part of NBIC II in The Netherlands, that is responsible for developing e-science tools and workflows

1 shared item   |   0 announcements

Members (4):

This Group has not been tagged yet!

Owner
Avatar Ch Christine Chichester
Show View

Network-member CWA 2.5 Quality Control


Created: Tuesday 22 September 2009 12:29:59 (UTC)

The goal of this group is to draft a set of minimal criteria for determining the quality of data sources to be considered for indexing into triple collections/stores and design levels of ‘confidence’ for datasets. Here is a preliminary list of components to be discussed as criteria for evaluation of data sources:     * Consistency     * Coverage/scop...

0 shared items   |   0 announcements

Members (2):

This Group has not been tagged yet!

Owner
30?size=80x80 Nl Marco Roos
Show View

Network-member BioSemantics Privileged Users @ Human Gene...

Unique name: LeidenBioSemanticsUsers
Created: Wednesday 23 September 2009 01:10:24 (UTC)

Group of colleagues at the Human Genetics Department of the Leiden University Medical Centre and closely collaborating groups who are interested to be prime users of new developments in BioSemantics and e-Science, and in return are willing to provide feedback and suggestions. See http://biosemantics.org for more information about the BioSemantics collaboration in the Netherlands.

15 shared items   |   1 announcements

Members (12):

Tags:
Owner
Avatar Ch Christine Chichester
Show View

Network-member CWA 2.8    Content acquisition


Created: Thursday 17 September 2009 10:57:16 (UTC)

This group is concerned with the acquisition of relevant and high quality resources to be the basis of the CWA nano-publcation triple store. Once the appropriate content has been identified, this group will actively approach the content holders and promote indexing the content into triple format and sharing it with CWA partners.

1 shared item   |   0 announcements

Members (3):

This Group has not been tagged yet!

Owner
733?size=80x80 Nl GerardM
Show View

Network-member CWA working group 2.10: multilinguality

Unique name: cwa-multilinguality
Created: Saturday 08 August 2009 07:54:03 (UTC)

As an alliance, the CWA favours support for multiple languages. Support for multiple languages means that it needs to be possible for both the software and the data to be displayed in multiple languages. Not everybody has English as its first language and many important medical corpora are in other languages. The CWA supports multi language support because: it...

1 shared item   |   0 announcements

Members (8):

Tags:
Owner
747?size=80x80 Nl Jacintha Valk
Show View

Network-member CWA working group 3.4: conference


Created: Wednesday 19 August 2009 16:38:36 (UTC)

Scope: organize the first CWA conference around a practical theme (suggestion: "Global Biobanks Harmonized"). Deliverables: conference plan / budget / invitee list Time Frame: August 2009 (conference planned early 2010)  

0 shared items   |   0 announcements

Members (10):

This Group has not been tagged yet!

Owner
747?size=80x80 Nl Jacintha Valk
Show View

Network-member NBICommons office


Created: Tuesday 18 August 2009 09:11:18 (UTC)

This group is for NBICommons employees and invited partners to keep track of a common agenda and running projects.

1 shared item   |   2 announcements

Members (9):

This Group has not been tagged yet!

Owner
745?size=80x80 Us Erik Schultes
Show View

Network-member CWA working group 2.9: triple browser / re...

Unique name: ConceptWebReasoning
Created: Saturday 15 August 2009 06:01:22 (UTC)

The Triple Browser & Reasoning (TBR) Working Group of the Concept Web Alliance confronts the major challenges associated with efficiently searching and 'creatively' reasoning with massive quantities of concept triples.  In the immediate time frame, members of the of the TBR will focus on (1) formulating precise definitions of how the Concept Web should in principle (and might in ...

1 shared item   |   0 announcements

Members (16):

Tags:
Owner
741?size=80x80 Gb gbilder
Show View

Network-member CWA 2.4: Unified persistent ID

Unique name: persistent ID
Created: Thursday 13 August 2009 15:11:47 (UTC)

Collaborate with existing initiatives and develop clear guidelines for unique Identifiers and how they relate to DOI’s URI’ etc. and an initial design of a ‘best practices’ and ‘certification plan’ at the concept level, not yet the triple level (collaboration with 2.6)  

1 shared item   |   0 announcements

Members (11):

This Group has not been tagged yet!

Owner
296?size=80x80 Nl Andrew Gibson
Show View

Network-member CWA working group 2.6: Nanopublications


Created: Wednesday 12 August 2009 14:12:31 (UTC)

The Concept Web Alliance is an organization founded to promote the semantically rich publication and dissemination of life science data and knowledge. The basic underlying units of this knowledge will be 'triples' - concept-relationship-concept - represented using the Resource Description Framework (RDF) specification of the W3C. Technologies that are built around RDF such as RDF Triplestores,...

1 shared item   |   1 announcements

Members (26):

Tags:

Latest announcement:: Nanopublication / Format Working Group Mailing List

Owner
30?size=80x80 Nl Marco Roos
Show View

Network-member BioAssist_NL

Unique name: bioassist_nl
Created: Wednesday 01 August 2007 13:05:51 (UTC)

NBIC's BioAssist program BioAssist[1], organised by the Netherlands BioInformatics Centre (NBIC[2]), is a program for support and dissemination of bioinformatics tools and expertise in the Netherlands. It advocates the use of e-science standards such as web services and workflow. It is associated with the projects VL-e[3] and BioRange[4]. Links: http://www.nbic.nl/support/BioAssist...

4 shared items   |   0 announcements

Members (19):

Tags:
Owner
3791?size=80x80 Gb David De Roure
Show View

Network-member HCLS - Semantic Web for Health Care and Li...

Unique name: hcls
Created: Friday 01 May 2009 17:12:56 (UTC)

The mission of the Semantic Web for Health Care and Life Sciences Interest Group (HCLSIG) is to develop, advocate for, and support the use of Semantic Web technologies for biological science, translational medicine and health care. These domains stand to gain tremendous benefit by adoption of Semantic Web technologies, as they depend on the interoperability of information from many domains and ...

8 shared items   |   0 announcements

Members (11):

Tags:
Owner
711?size=80x80 Gb Jan Velterop
Show View

Network-member CWA-Working Group 3.2 ConceptWiki

Unique name: ConceptWiki
Created: Wednesday 29 July 2009 16:03:54 (UTC)

This CWA Working Group is concerned with the CWA ConceptWiki and its relationship to other scientific Wikis. This place on MyExperiment will serve as a common forum for the Working Group.

3 shared items   |   3 announcements

Members (21):

Tags:
Owner
30?size=80x80 Nl Marco Roos
Show View

Network-member Semantic_BioAID_collaboration


Created: Friday 22 August 2008 10:49:27 (UTC)

Group for collaboration of Andy, Scott, and Marco.

5 shared items   |   1 announcements

Members (4):

Tags:
Owner
30?size=80x80 Nl Marco Roos
Show View

Network-member e-science support team for NBIC

Unique name: eScienceSupportTeam4NBIC
Created: Sunday 16 March 2008 22:23:11 (UTC)

This group brings together scientists with expertise in both (medical) bioinformatics and e-science. The members can give advice to bioinformaticians who want to adopt an 'e-science approach'. They want to share their expertise and experience for the application of technologies such as workflow, web/biomoby services, grid, semantic web, etcetera. The group was founded in particular for the Du...

3 shared items   |   0 announcements

Members (11):

Tags:
Owner
269?size=80x80 Ca Fong Chun Chan
Show View

Network-member Biomoby

Unique name: biomoby
Created: Tuesday 04 December 2007 09:48:10 (UTC)

This is a group for those involved in the Biomoby world.  Whether you are a developer or simple a  user of it, you can join this group to keep up to date on the latest Biomoby news.

0 shared items   |   0 announcements

Members (15):

Tags:

What is this?

Linked Data

Non-Information Resource URI:


Alternative Formats

HTML
RDF
XML
Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
About | Privacy | Publications | Contact / Feedback | Mailing List
Icons: Silk icon set 1.3

Copyright © 2007 – 2018 The University of Manchester and University of Southampton