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AffyidToGeneAnnotationnoGOIDandPepstats.xml

Created: 2008-07-13 09:32:53 | Last updated: 2008-07-13 09:33:32

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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KeggDbinfo.xml

Created: 2008-07-13 09:37:19 | Last updated: 2008-07-13 09:37:56

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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GetVbidasOperationsInfo.xml

Created: 2008-07-13 09:38:32

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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GetVbidasGenomeInfo.xml

Created: 2008-07-13 09:39:10

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 36 times | Downloaded: 26 times

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GetVbiGlimmerServiceOperationInfo.xml

Created: 2008-07-13 09:39:52

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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GetVbiGlimmerOperationsInfo.xml

Created: 2008-07-13 09:40:31 | Last updated: 2008-07-13 20:55:18

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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GetPathportInterproOperationsInfo.xml

Created: 2008-07-13 09:41:16

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 37 times | Downloaded: 23 times

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GetCondorblastInfo.xml

Created: 2008-07-13 09:42:01 | Last updated: 2008-07-13 09:42:31

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 38 times | Downloaded: 27 times

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GetCondorBlastOperationInfo.xml

Created: 2008-07-13 09:43:06

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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EmblAccToPredictArabidopsisGenes.xml

Created: 2008-07-13 09:43:52

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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ListKeggGenomes.xml

Created: 2008-07-13 09:44:30

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 24 times

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ListEmbossDatabases.xml

Created: 2008-07-13 09:45:07 | Last updated: 2008-07-13 20:54:47

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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KeggPathwayIdToGeneEntries.xml

Created: 2008-07-13 09:45:46

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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KeggDatabaseNameToDatabaseInfo.xml

Created: 2008-07-13 09:46:22

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 36 times | Downloaded: 23 times

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EmblAccToKeggPathway2.xml

Created: 2008-07-13 09:46:57

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 37 times | Downloaded: 25 times

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EmblAccToEmblRecordUsingXEMBL.xml

Created: 2008-07-13 09:47:44

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 25 times

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EmblAccToEmblRecordUsingSeqret.xml

Created: 2008-07-13 09:49:28 | Last updated: 2008-07-13 20:54:21

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 42 times | Downloaded: 21 times

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EmblAccToEmblRecordUsingDDBJ.xml

Created: 2008-07-13 09:50:06

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 22 times

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AffyidToProteinAnnotationPipeline.xml

Created: 2008-07-13 09:50:44

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 34 times | Downloaded: 24 times

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AffyidToMedlineRecords.xml

Created: 2008-07-13 09:51:23

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 25 times

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AffyidToMedlineIds.xml

Created: 2008-07-13 09:52:02

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 26 times

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AffyidToGeneAnnotationPipeline1.xml

Created: 2008-07-13 09:52:36

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 25 times

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AffyidToFastaSequence.xml

Created: 2008-07-13 09:53:17

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 24 times

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AffyidToEmblRecord.xml

Created: 2008-07-13 09:53:59

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 34 times | Downloaded: 32 times

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AffyidToBlastxPDB.xml

Created: 2008-07-13 09:55:12

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 28 times

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AffyidToBlastnHtgoMus.xml

Created: 2008-07-13 09:55:47 | Last updated: 2008-07-13 20:53:51

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 24 times

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workflow.xml

Created: 2008-07-13 09:56:22

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 41 times | Downloaded: 31 times

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seqvista.xml

Created: 2008-07-13 09:56:57

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 26 times

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interproscanForGeneAnnotation.xml

Created: 2008-07-13 09:57:31

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 24 times

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interproscan.xml

Created: 2008-07-13 09:58:14

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 32 times

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getExperimentIds.xml

Created: 2008-07-13 09:58:46

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 34 times | Downloaded: 23 times

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biomoby.xml

Created: 2008-07-13 09:59:20

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 42 times | Downloaded: 31 times

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SnpIdToComplexAnnotationWithGo.xml

Created: 2008-07-13 09:59:58

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 24 times

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SnpIdToComplexAnnotation.xml

Created: 2008-07-13 10:00:37

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 42 times | Downloaded: 24 times

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SNPBasedAnnotationWithAlternate.xml

Created: 2008-07-13 10:01:38

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 22 times

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SNPBasedAnnotation.xml

Created: 2008-07-13 10:02:42

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 37 times | Downloaded: 22 times

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NFKBIE_AFFYID_TO_ANNOTATION_alternate.xml

Created: 2008-07-13 10:04:32

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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NFKBIE_AFFYID_TO_ANNOTATION.xml

Created: 2008-07-13 10:05:10

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 41 times | Downloaded: 25 times

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KeggPathwayIdToPathwayMap.xml

Created: 2008-07-13 10:05:48

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 37 times | Downloaded: 25 times

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InterProScanSample.xml

Created: 2008-07-13 10:06:24

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 38 times | Downloaded: 22 times

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GoGraph.xml

Created: 2008-07-13 10:07:03

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 36 times | Downloaded: 24 times

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GetSwissProtRecord.xml

Created: 2008-07-13 10:07:39

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 27 times

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GetEmblRecord2.xml

Created: 2008-07-13 10:08:14

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 36 times | Downloaded: 24 times

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GetEmblRecord.xml

Created: 2008-07-13 10:08:56

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 26 times

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GetArrayDataUrl.xml

Created: 2008-07-13 10:10:12

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 32 times | Downloaded: 23 times

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GeneAnnotationIsmb.xml

Created: 2008-07-13 10:10:47

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 24 times

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GDMageIds.xml

Created: 2008-07-13 10:11:28

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 38 times | Downloaded: 23 times

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EmblAccToKeggPathwayForPaper.xml

Created: 2008-07-13 10:12:08

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 40 times | Downloaded: 22 times

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EmblAccToKeggPathway3.xml

Created: 2008-07-13 10:12:53

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 38 times | Downloaded: 27 times

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EmblAccToKeggGeneEntry.xml

Created: 2008-07-13 10:13:29

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 26 times

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EmblAccToGoIds.xml

Created: 2008-07-13 10:14:10

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 42 times | Downloaded: 28 times

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BlastagainstPDBatDDBJ.xml

Created: 2008-07-13 10:14:49

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 41 times | Downloaded: 23 times

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BlastNagainstDDBJatDDBJ.xml

Created: 2008-07-13 10:15:29

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 27 times

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BiomartAndEmboss.xml

Created: 2008-07-13 10:16:18

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 38 times | Downloaded: 27 times

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ArrayExpressWF.xml

Created: 2008-07-13 10:17:02

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 26 times

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AnnotationPipelineNoKeggForSEEK.xml

Created: 2008-07-13 10:22:54

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 37 times | Downloaded: 24 times

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AnnotationPipelineForSEEK.xml

Created: 2008-07-13 10:23:34

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 47 times | Downloaded: 28 times

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AnilClustering.xml

Created: 2008-07-13 10:24:10

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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AmbitTestWorkflow.xml

Created: 2008-07-13 10:24:44

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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AffyidToGoGraph.xml

Created: 2008-07-13 20:24:03

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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AffyidToGeneAnnotationforPaper.xml

Created: 2008-07-13 20:24:51

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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AffyidToGeneAnnotation4.xml

Created: 2008-07-13 20:25:33

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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AffyidToGeneAnnotation3.xml

Created: 2008-07-13 20:26:13

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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AffyidToGeneAnnotation2.xml

Created: 2008-07-13 20:27:10

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

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AffyidToGeneAnnotation10.xml

Created: 2008-07-13 20:27:52

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 55 times | Downloaded: 33 times

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AffyIdToGeneAnnoation(NFKBIE)_final.xml

Created: 2008-07-13 20:28:28

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: XML

Comments: 0 | Viewed: 73 times | Downloaded: 40 times

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Workflow discovery benchmarks

Created: 2008-07-12 11:20:23 | Last updated: 2008-10-09 16:41:46

7 items in this pack

Comments: 0 | Viewed: 163 times | Downloaded: 49 times

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Paul Fisher workflows for benchmarks PR and CA2

Created: 2008-07-12 20:26:49 | Last updated: 2008-07-13 09:21:55

77 items in this pack

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Peter Li workflows for benchmarks PR and CA2

Created: 2008-07-13 20:32:39 | Last updated: 2008-07-13 20:47:19

66 items in this pack

Comments: 0 | Viewed: 171 times | Downloaded: 24 times

unnested_qtl_pathway_3.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

unnested_qtl_pathway_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

geneId_to_pathway.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

blast_simplifier.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

add_ncbi_to_string.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

Gi_to_pathway.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

parse_swiss.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

geneHunt.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

ensembl_gene_info.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

parse_gene_info.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

ensembl_genes_to_go_terms.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

parse_uniprot_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

gene_ontology_analysis_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

gene_ontology_analysis.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

complete_2_text_mining.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

sub_gene_info_to_uniprot.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

complete_3.1.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

extract_uniprot_embl_gi.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

maxdBrowse_geneHunt.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

Probeset_id_2_Swissport_id.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

text_mining.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

complete_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

remove_nulls.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

linking.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

lister.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

Ensembl_id_2_Swissport_id.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

parse_uniprot.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

complete.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

complete_deleted.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

maxdBrowse.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

remove_duplicates_full.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

remove_duplicates.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

complete_test.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

qtl_analysis.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

uniprot_search.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

interpro_scan.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

interpro_url.xml (1)

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

parse_sequence.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

swiss_and_name_seq.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

swiss_and_name.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

expression_values.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

parse_gene_name.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

metabolic_pathway.xml (1)

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A list of Kegg entires are supplied to the Kegg database which then retrieves the associated metabolic pathways for each entry supplied. e.g. Ids takes in a value of 351, whilst abbr takes in a value of hsa. Thus hsa:351 corresponds to neurodegenerative disorders and alzheimers disease pathways. [fisherp@cs.man.ac.uk]

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

ACC_to_GI.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

Ensembl_genes_to_swiss_id.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

string_complete.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

gene_info_to_gene_name.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

SUB_genes_info_names.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

bind-idsearch.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

bind-text.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

genes_from_probesets.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

probeset_in_qtl.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

database_and_genes.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

protein_protein_interactions.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

gene_by_species.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

blast_GO.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

BlastComparer.xml (1)

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

stringList.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

maxdBrowse_strings.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

getgenesbyspecies.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

gene_ontology_diagram.xml (1)

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This workflow builds up a subgraph of the Gene Ontology (http://www.geneontology.org) to show the context for a supplied term or terms. It shows this context by colouring all ancestors of the term, all children and all siblings. By default, ancestors of the supplied term or terms are coloured orange, siblings purple and direct children teal. Other terms appear in the default wheat colour.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

affy_ids.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

example.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

metabolic.xml (1)

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

interpro_scan_3.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

interpro_scan_2.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

linking1.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

genomic_sequence.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

linking3.xml (1)

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This workflow links between a specified EMBL accesion number to corresponding identifiers in the MEDLINE database.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

protein2dna.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

blast_to_fasta.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

blast.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

DDBJ_BLAST.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

AffyidToGeneAnnotationnoGOIDandPepstats.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Peter Li

Make 28 CPUh load on the Grid (1)

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This workflow makes 28 CPU hours load on a Grid. Therefore it calls 100 times (represented by 100 input tokens) the program "makeload", which makes 1000 Seconds load each. The processing is done recurrent, so you can use this workflow to benchmark the speedup of your Grid environment, or just to heat up your computer center... This workflow also serves as an example of a typical parameter study modeled with GWorkflowDL. Of cause this workflow can only be invoked with a X509 certif...

Created: 2008-11-25 | Last updated: 2008-12-17

Credits: Andreas Hoheisel

NMR Shift Dereplication benchmark in SWI-P... (1)

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Created: 2010-05-14 | Last updated: 2010-05-14

Credits: Samuel Lampa

NMR Shift Dereplication benchmark in SWI-P... (1)

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Created: 2010-05-14 | Last updated: 2010-05-14

Credits: Samuel Lampa