ensembl_genes_to_go_terms.xml

Created: 2008-07-12 09:27:59 Last updated: 2008-07-12 09:28:18

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Workflow Components

Inputs (1)

Name	Description
Ensembl_genes

Processors (11)

Name	Type	Description
regex_2	stringconstant
split_by_regex_2	local
Ensembl_gene_info	workflow
Remove_swiss_nulls	workflow
Uniprot_record_search	workflow
Parse_swiss_ids	workflow
Parse_uniprot	workflow
parse_go_term	beanshell
split_go_terms	local
Remove_Go_nulls	workflow
getTree	arbitrarywsdl	Get tree information by GO ID

Beanshells (4)

Name	Inputs	Outputs
remove_Nulls	input	output
parse_swiss	input	output
remove_Nulls	input	output
parse_go_term	input	output

Outputs (3)

Name	Description
Go_terms
Go_Tree
removed_null_go_terms

Links (15)

Source	Sink
Ensembl_gene_info:gene_info	Parse_swiss_ids:gene_info
Ensembl_genes	Ensembl_gene_info:genes_in_region
Parse_swiss_ids:swiss_ids	Remove_swiss_nulls:input_string
Parse_uniprot:parsed_data	parse_go_term:input
Remove_Go_nulls:removed_nulls	removed_null_go_terms
Remove_Go_nulls:removed_nulls	split_go_terms:string
Remove_swiss_nulls:removed_nulls	split_by_regex_2:string
Uniprot_record_search:uniprot_record	Parse_uniprot:uniprot_record
getTree:Result	Go_Tree
parse_go_term:output	Remove_Go_nulls:input_string
regex_2:value	split_by_regex_2:regex
regex_2:value	split_go_terms:regex
split_by_regex_2:split	Uniprot_record_search:swissprot_id
split_go_terms:split	getTree:id
parse_go_term:output	Go_terms

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Paul Fisher

Information Attributions (0)

(Workflows/Files)

None

Information Tags (1)

Uploader tags

benchmarks

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Information Shared with Groups (0)

None

Information Featured In Packs (1)

Paul Fisher workflows for benchmarks PR and CA2

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Information Attributed By (0)

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None

Information Favourited By (0)

No one

Information Statistics

1995 viewings

1981 downloads

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Citations (0)

None

Version History

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ensembl_genes_to_go_terms.xml

Created by Antoon Goderis on Saturday 12 July 2008 09:27:59 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 09:28:18 (UTC)