blast.xml

Created: 2008-07-12 10:56:39 Last updated: 2008-07-12 10:56:54

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Workflow Components

Inputs (3)

Name	Description
program
database
query_seq

Processors (1)

Name	Type	Description
blast_ddbj	arbitrarywsdl

Beanshells (0)

Outputs (1)

Name	Description
text_blast_out

Links (4)

Source	Sink
database	blast_ddbj:database
program	blast_ddbj:program
query_seq	blast_ddbj:query
blast_ddbj:Result	text_blast_out

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

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Paul Fisher

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benchmarks

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Information Featured In Packs (1)

Paul Fisher workflows for benchmarks PR and CA2

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Information Statistics

1851 viewings

1834 downloads

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blast.xml

Created by Antoon Goderis on Saturday 12 July 2008 10:56:39 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 10:56:54 (UTC)

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Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNIL SRVLARSRKRPAKIYVYINELCTVLKAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLT NTENTASEASRTRGSRRQIQRLEQLLALYVAEIRRLQEKELDLSELDDPDSSYLQEAR LKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERLINKPGLDTFPDY GDVLRAVEKAATRHSLGLP...

Created: 2007-10-03 | Last updated: 2009-12-03