DDBJ_BLAST.xml

Created: 2008-07-12 10:59:33 Last updated: 2008-07-12 11:00:38

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Workflow Components

Inputs (3)

Name	Description
maskedSeq
program
database

Processors (1)

Name	Type	Description
blast_ddbj	arbitrarywsdl

Beanshells (0)

Outputs (1)

Name	Description
text_blast_out

Links (4)

Source	Sink
database	blast_ddbj:database
maskedSeq	blast_ddbj:query
program	blast_ddbj:program
blast_ddbj:Result	text_blast_out

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Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

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Information Credits (1)

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Paul Fisher

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Paul Fisher workflows for benchmarks PR and CA2

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Information Statistics

1830 viewings

1808 downloads

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DDBJ_BLAST.xml

Created by Antoon Goderis on Saturday 12 July 2008 10:59:33 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 11:00:38 (UTC)

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Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNIL SRVLARSRKRPAKIYVYINELCTVLKAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLT NTENTASEASRTRGSRRQIQRLEQLLALYVAEIRRLQEKELDLSELDDPDSSYLQEAR LKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERLINKPGLDTFPDY GDVLRAVEKAATRHSLGLP...

Created: 2007-10-03 | Last updated: 2009-12-03