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411?size=60x60 Gb Dfmac
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Blob JISC eRoadshow at Kings, London

Created: 2009-01-14 10:23:32 | Last updated: 2009-01-14 10:24:05

Credits: User Dfmac

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 JISC eRoadshow at Kings, London

File type: Adobe PDF

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345?size=60x60 Nl Wassinki
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Blob Results of the Mapping oligonucleotides to an assembly

Created: 2008-12-19 09:53:23

Credits: User Wassinki

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of the complete input set analysed by the "Mapping oligonucleotides to an assembly" workflow.

File type: ZIP archive

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Avatar Felicity
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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:20:35 | Last updated: 2008-12-01 07:11:27

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 3. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%203

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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:18:47 | Last updated: 2008-12-01 07:12:41

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 2. The mashup can be viewed at: http://www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%202

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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:17:41 | Last updated: 2008-12-01 07:13:40

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 1. The mashup can be viewed at: http://www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%201

File type: ZIP archive

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Avatar Felicity
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Blob Popfly Blocks for Protein Prediction Mashup 2

Created: 2008-11-27 10:15:10 | Last updated: 2008-12-01 07:16:18

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Prediction Mashup 2. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Prediction%20Mashup%201

File type: ZIP archive

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Avatar Felicity
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Blob Popfly Blocks for Protein Prediction Mashup 1

Created: 2008-11-27 10:13:29 | Last updated: 2008-12-01 07:15:28

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Prediction Mashup 1. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Prediction%20Mashup%201  

File type: ZIP archive

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Blob Popfly Blocks for Protein Characteristics Mashup 1

Created: 2008-11-27 10:11:14 | Last updated: 2008-12-01 07:14:32

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics Mashup 1. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Characteristics%20Mashup%201  

File type: ZIP archive

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Avatar Felicity
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Blob Protein Analysis Popfly Blocks

Created: 2008-11-27 10:03:04 | Last updated: 2008-12-01 07:17:33

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A zip file containing Popfly blocks for protein analysis. It also includes a file explaining the function of each block as well as a list of mashups in which these blocks have been used.

File type: ZIP archive

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490?size=60x60 It Giovanni Dall'Olio
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Blob myExperiment experimental plugin for ubiquity

Created: 2008-10-25 17:34:40 | Last updated: 2008-10-25 18:36:05

Credits: User Giovanni Dall'Olio

License: Creative Commons Attribution-Share Alike 3.0 Unported License

NOTE: sorry, there is an error in the plugin :(. Open the js file and substitute 'splicing' with {QUERY}.  Ubiquity is a firefox experimental extension from mozilla labs, with the goal of giving you a new and quicker experience of the web. You can find a better description here: - http://labs.mozilla.com/projects/ubiquity/ And I recommend you this video: - ubiquity video Here it is an experimental search plugin for myExperiment. Have a look at it, and tell me if you have ideas to i...

File type: JavaScript

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480?size=60x60 Za Suza Adam
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Blob LIFEsparks biotechnology network

Created: 2008-10-19 11:05:10 | Last updated: 2008-10-19 11:12:58

Credits: User Suza Adam

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The LIFEsparks biopartnering social forum aims to boost the commercial success of Southern African initiatives and start-up companies focused the life sciences sector (biotechnology and medical devices), vis-a-vis allowing participants to share ideas, knowledge and to present their business and or investment opportunities to potential partners and funders.

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97?size=60x60 Be Antoon Goderis
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Blob User survey report

Created: 2008-10-10 09:44:52

Credits: User Antoon Goderis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Summary report of user survey on workflow sharing, re-use, and discovery

File type: Adobe PDF

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97?size=60x60 Be Antoon Goderis
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Blob CA 24 exercises

Created: 2008-10-09 14:39:01

Credits: User Antoon Goderis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

PowerPoint file containg 12 workflow re-use and discovery exercises, as part of CA24.

File type: PowerPoint presentation

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97?size=60x60 Be Antoon Goderis
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Blob CA24 assessments

Created: 2008-10-09 14:29:36 | Last updated: 2008-10-09 14:30:30

Credits: User Antoon Goderis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Excel file with assessments made by 24 participants as part of CA24. See exercise materials to understand the columns or contact goderisa@cs.man.ac.uk.

File type: Excel workbook

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1217?size=60x60 Gb Alan Williams
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Blob Example SwissProt Data

Created: 2008-09-25 15:09:03

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Example SwissProt data to be used for Taverna examples.

File type: Plain text

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1217?size=60x60 Gb Alan Williams
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Blob Example Genbank data

Created: 2008-09-25 15:00:28

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Example file containing GenBank data so that it can be used for example Taverna workflows

File type: Plain text

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Avatar Jiro
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Blob Genbank Cross Reference Blocks

Created: 2008-08-18 03:36:47 | Last updated: 2008-08-18 03:41:55

Credits: User Jiro

License: Creative Commons Attribution 3.0 Unported License

Popfly blocks used in the UniProt to Genbank cross reference mashup. The first block in this mashup is the User Input block from Microsoft, which is not included here.

File type: ZIP archive

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Blob Article List Viewer Blocks

Created: 2008-08-18 03:29:20 | Last updated: 2008-08-18 03:53:39

Credits: User Jiro

License: Creative Commons Attribution 3.0 Unported License

Popfly Blocks used in the Article List Viewer Mashup

File type: ZIP archive

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Avatar Us Yiming Sun
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Blob A Test of myExperiment's file uploading

Created: 2008-08-06 18:22:53

Credits: User Yiming Sun

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is very neat.  Bold, Italics, Underlined, and Strikethru  

File type: Plain text

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Avatar Woloski
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Blob SaaS Taxonomy

Created: 2008-07-16 03:17:43

Credits: User Woloski

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an attempt to describe Software as a Service Taxonomy within different spheres

File type: GIF image

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258?size=60x60 Kwon, Jekeun
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Blob sample

Created: 2007-11-15 04:25:53

Credits: User Kwon, Jekeun

License: Creative Commons Attribution-Share Alike 3.0 Unported License

sample

File type: Progressive JPEG image

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4607?size=60x60 Gr George Kargas
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Blob Meme parser

Created: 2024-12-18 01:11:45 | Last updated: 2025-01-27 08:10:31

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This R script is designed to parse and process MEME motif analysis output files from a directory containing results for different sequence orientations (convergent, divergent, and same) in the context of small open reading frames (sORFs). The script loads necessary libraries, defines functions to parse individual MEME output files (parse_meme_output) and process directories containing these files (process_meme_results). It extracts key information such as motif patterns, widths, number of sit...

File type: Trident (Package)

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4607?size=60x60 Gr George Kargas
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Blob Batch Predict_Property Analysis for Protein Sequences

Created: 2024-12-17 12:29:43

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This Python script automates the execution of Predict_Property, a tool for analyzing specific properties of protein sequences, on multiple FASTA input files. Predict_Property can be downloaded from this github repository https://github.com/realbigws/Predict_Property. The script is tailored for batch processing of large datasets, ensuring efficient execution and organized output management.

File type: text/x-python

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4607?size=60x60 Gr George Kargas
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Blob Batch Phobius Analysis for Protein Sequences

Created: 2024-12-17 12:26:51

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This Python script automates the process of running Phobius, a tool for predicting signal peptides and transmembrane (TM) domains in protein sequences, on multiple input FASTA files. The script is particularly useful for large-scale bioinformatics projects where analyzing numerous protein datasets is required.

File type: text/x-python

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4607?size=60x60 Gr George Kargas
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Blob BLASTP Analysis Pipeline Script

Created: 2024-12-17 12:23:59 | Last updated: 2024-12-17 12:32:28

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This script processes multiple protein FASTA (.faa) files through BLASTP, comparing them against a specified BLAST database (like nr) to identify species-specific genes.

File type: text/x-python

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4586?size=60x60 In Surendra Mund
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Blob Unification of General Relativity and Quantum Mechan...

Created: 2022-02-25 10:37:18

Credits: User Surendra Mund

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This particular article is devoted to abreakthrough which is waiting for 100 years of physics. In thisparticular article I am unifying two kind of physical structuresand law’s governed by them with help of Principle of CentralSystem Relativity obtained by me in my previous articlenamed “Generalization of various kinds of Central Systemsexist in Universe and their mathematical representations” [6].Albert Einstein tried to unify both theories which work onmacroscopic and micro...

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4450?size=60x60 In Drkrish...
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Blob Antiviral Drugs in the battle against COVID-19 & Min...

Created: 2022-02-02 07:17:26

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Patent Evaluation of Antiviral Drugs in the battle against COVID-19 &Minimization of Risks Associated with Occurrence of Dangerousviral mutations During Treatment with Antiviral Mutagenic Agents 

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Avatar Gb Robert Muetzelfeldt
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Blob webAKT test1

Created: 2021-11-29 16:37:24 | Last updated: 2021-11-29 16:37:42

Credits: User Robert Muetzelfeldt

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Test

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Avatar Hamid Raeisi Vanani
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Blob my resume in persian

Created: 2021-09-09 05:32:27 | Last updated: 2021-09-09 05:33:13

Credits: User Hamid Raeisi Vanani

License: Creative Commons Attribution-Share Alike 3.0 Unported License

my resume Hamid Raeisi Vanani

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Blob Pathway analysis

Created: 2021-08-20 04:45:34 | Last updated: 2021-08-20 15:07:09

Credits: User Z

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Java inhalation requiredif see error:error: Java version detected but couldn't parse version from No Java runtime present, requesting install.open terminal and paste the followingexport JAVA_HOME=/Library/Internet\ Plug-Ins/JavaAppletPlugin.plugin/Contents/Home

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4586?size=60x60 In Surendra Mund
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Blob Formation and Stability of Various Type of Central S...

Created: 2021-08-04 04:16:41

Credits: User Surendra Mund

License: Creative Commons Attribution 4.0 International License

In this particular article I will prove some former terminologies which were established in my two former papers about the Bodies and the Broken Parts and how these are basic components of several type of central systems on different geometrical scales in Universe. I will also prove that how these types of processes are required in the stability of these central systems. In this particular article I will prove n-type of central systems exists in universe in my formerly described N-time inflat...

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4586?size=60x60 In Surendra Mund
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Blob Generalization of Different Type of Bodies Exist in ...

Created: 2021-07-26 10:53:39

Credits: User Surendra Mund

License: Creative Commons Attribution-Share Alike 3.0 Unported License

From my article “On the Configuration of EM-waves and Bosons” I need to describe about what I configured about the types of bodies exist in Universe. How these behave in different situations and what should be the type of coupling scalar field exists in surroundings of the particular kind of body and what should be measurement techniques of perfection of a particular body. So, in this particular article I tend to prove the former terminology which I have started by thinking about ...

File type: Adobe PDF

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4586?size=60x60 In Surendra Mund
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Blob On the Configuration of EM Waves and Bosons

Created: 2021-07-26 10:51:28

Credits: User Surendra Mund

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the first expression of my thoughts and my experiments with Nature about the mathematical description of the Universe. The theories about our surrounding Nature became popular from our ancient civilizations and may be from the starting of life. So, by coming straight forward to the point light had been concerned as the most remarkable thing from the starting time of life and here my first paper is based on the particular physical property of Universe. Here, I am giving the particular ...

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4569?size=60x60 Us Renub Research
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Blob Cardiac Arrhythmia Market by Segment, Region, End-Us...

Created: 2020-12-23 10:27:18

Credits: User Renub Research

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Globally, Cardiovascular diseases are the leading cause of mortality. According to the World Health Organisation, nearly 17.9 million global deaths occur due to Cardiovascular disease every year. According to the American Heart Association (AHA), more than 800 Thousand individuals die from cardiovascular diseases in the United States each year and nearly 92.1 million Americans are living with some form of cardiovascular disease. A cardiac arrhythmia is a condition where the person heartbeat i...

File type: PowerPoint 2007 presentation

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4450?size=60x60 In Drkrish...
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Blob International Journal of Research Studies in Medical...

Created: 2020-08-21 11:22:57

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Abstract – Hydroquinone as a volatile aromatic hydrocarbon; There is a huge confusion in the public, as well as among politicians and even some scientists, about those two molecules. That confusion ultimately led to people accidently overdosing. Both molecules can be classified as 4-aminoquinolines, and both have anti-plasmodial activities, but they remain two different molecules with some different metabolites. Chloroquine has been widely used since the 1950s for prophylactic and ...

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Blob Antiviral nucleosides- Flu Viruses- QUINOLINES-COV...

Created: 2020-08-21 10:58:20 | Last updated: 2020-08-21 10:58:52

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Antiviral nucleosides-  Flu Viruses-                QUINOLINES-COVID-19 Hydroquinone as a volatile aromatic hydrocarbon; There is a huge confusion in the public, as well as among politicians and even some scientists, about those two molecules. That confusion ultimately led to people accidently overdosing. Both molecules can be classified as 4-aminoquinolines, and both have anti-plasmodial activities, but they...

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Blob Impact of the water quality of El-Rahawy Drain on so...

Created: 2020-07-22 10:32:45

Credits: User anas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The present study aims to evaluate the water quality of two locations in Rosetta Branch of River Nile and its histopathological and genetic adverse effects on Nile tilapia (Oreochromis niloticus). Water and fish samples were collected from up and downstream of El-Rahawy Drain discharge point (location I and II, respectively) during the summer and winter seasons. The water quality, liver histopathology and DNA alteration of fish was examined. ISSR-PCR technique wa...

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4528?size=60x60 In Insilic...
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Blob Complexity Isosteres

Created: 2020-04-27 13:28:21

Credits: User Insilicoconsulting

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Isosteric transforms generated using compounds referenced in Pubmed and whose CDK complexity descriptor is same. 

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Blob Knime Data Table for Antiviral activity multiclass P...

Created: 2020-03-25 06:18:32

Credits: User Insilicoconsulting

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the CTD data table associated with my recent workflow Antiviral activity multiclass Predictor.

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Avatar Miriam Payá
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Blob workflow as file

Created: 2020-03-18 09:00:34

Credits: User Miriam Payá

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Galaxy wf for rnaseq analysis with diff expr 

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Blob HCV NS3/4A 3 Protease Inhibitors: Simeprevir, Proces...

Created: 2020-02-19 06:12:03

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In polymerase and protease drug targets and drug development, which has resulted in a strong infectious disease R&D portfolio,”and has given the company its key pipeline asset, simeprevir (TMC435), a novel protease inhibitor in Phase III clinicaldevelopment for hepatitis C that is being developed in collaboration with Janssen Pharmaceuticals. Currently, hepatitis C virus(HCV) infection is considered a serious health-care problem all over the world. A good number of direct-acting ant...

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Blob Chronic Hepatitis (Chc), Viral Polymerase Nucleotide...

Created: 2019-10-12 11:22:31

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Sofosbuvir is a viral polymerase nucleotide inhibitor that was approved in December2013 by the United States Food and Drug Administration (FDA), and in January 2014by the European Medicines Agency for the treatment of HCV infection [1]. The WHOGuidelines for the screening, care and treatment of persons with hepatitis C infectionrecommend sofosbuvir in combination with ribavirin in genotypes 1, 2, 3 and 4 HCVinfection, either with or without pegylated interferon (depending on the HCV genotype)...

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4540?size=60x60 Us Joshua Borycz
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Blob Test

Created: 2019-10-03 17:25:58

Credits: User Joshua Borycz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Test

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Blob Bempedoic Acid a Small Molecule Drug Process and Syn...

Created: 2019-07-23 07:04:13

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Low Density Lipoprotein Cholesterol AbstractBempedoic acid (ETC-1002), a small molecule drug, promotes low density lipoprotein (LDL) receptor mediated clearanceof LDL-cholesterol (LDL-C) by inhibition of adenosine triphosphate citrate lyase (ACL), a mechanism complementary to thoseof existing lipid-modifying therapies. Bempedoic acid is a pro-drug activated specifically within the liver where it inhibits ACL,a regulatory checkpoint within the cholesterol biosynthesis pathway. By inhibiti...

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Blob Crystallization and Polymorphism-Scalable Process fo...

Created: 2018-12-04 11:45:47

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Crystallization and Polymorphism-Scalable Process for Celecoxib and It’s Polymorph From-3

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Blob Citation: Krishnasarma P, MS Chakravarthy. Crystalli...

Created: 2018-12-04 11:43:44

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Citation: Krishnasarma P, MS Chakravarthy. Crystallization and Polymorphism-Scalable Process for Celecoxib and It’s Polymorph From-3(Non- Steroidal Anti-Inflammatory Drug (NSAID). LOJ Med Sci 2(2)-2018. LOJMS.MS.ID.000134. 125Review ArticleCrystallization and Polymorphism-Scalable Process forCelecoxib and It’s Polymorph From-3 (Non- SteroidalAnti-Inflammatory Drug (NSAID) 

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Blob Cefpodoxime Proxetil and its By-Products: A Comparat...

Created: 2018-08-31 07:40:48

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Cefpodoxime Proxetil and its By-Products: A Comparative Study as Per EP-7 Krishnasarma pathy*LOJ Med Sci 

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Blob Biomedical Journal of Scientific & Technical Research.

Created: 2018-08-31 06:24:53

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Considerations for Successful Scale-Up to Tox Batches and Phase-Api (Bulk Drug substance)[*]       Krishnasarma pathy* DOI : 10.26717/BJSTR.2018.08.001662Biomedical Journal of Scientific & Technical Research.

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Blob Biomedical Journal of Scientific & Technical Researc...

Created: 2018-08-31 06:23:50

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Considerations for Successful Scale-Up to Tox Batches and Phase-Api (Bulk Drug substance)[*]       Krishnasarma pathy* DOI : 10.26717/BJSTR.2018.08.001662Biomedical Journal of Scientific & Technical Research.

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Credits: User Drkrishnasarmapathy

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Case History-The Control of Impurities-A CriticalIssue to The Active Pharmaceutical Ingredient 

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