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3181?size=60x60 Us Kayleigh Ayn Bohémier
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Blob Messier Objects and Stars

Created: 2011-10-05 05:49:01 | Last updated: 2011-10-05 05:49:31

Credits: User Kayleigh Ayn Bohémier

Attributions: Workflow What's the Season?

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the Excel spreadsheet for use with the What's the Season? workflow (see list of attributions). It contains the object name, RA, Dec, magnitude, and distance. The spreadsheet was built using the following sources. Dolan (n.d.), Frommert & Kronberg (2007), and Kronberg (1998) were consulted the most, with some RA/Dec values coming from Wikipedia.     Alpha Crucis. (2011, July 28). In Wikipedia, the free encyclopedia. Retrieved on 26 September 2011, from http://en.wikipe...

File type: application/x-crossover-xls

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2862?size=60x60 Gb Liz Masterman
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Blob Rave UX Requirements: version 1.0

Created: 2011-09-24 17:18:56 | Last updated: 2011-09-24 17:18:57

Credits: User Liz Masterman

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Uploaded as a test for viewing packs.

File type: Word document

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298?size=60x60 Us Andrea Wiggins
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Blob Input for PS3 # 2 Part 2

Created: 2011-09-14 02:39:04 | Last updated: 2011-09-14 02:44:58

Credits: User Andrea Wiggins

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Input file for Problem 2, Part 2 in Problem Set 3 for IST 600 at Syracuse University in Fall 2011.

File type: XML

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298?size=60x60 Us Andrea Wiggins
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Blob Input for PS3 #2 Part 1

Created: 2011-09-14 02:37:49 | Last updated: 2011-09-14 02:37:50

Credits: User Andrea Wiggins

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Input file for Problem 2, Part 1 in Problem Set 3 for IST 600 at Syracuse University in Fall 2011.

File type: XML

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298?size=60x60 Us Andrea Wiggins
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Blob NY Broccoli Production

Created: 2011-09-14 02:06:18 | Last updated: 2011-09-14 02:08:13

Credits: User Andrea Wiggins

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Data input file for Problem 3 on Problem Set 3 for IST 600 at Syracuse University in Fall 2011.

File type: Excel workbook

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298?size=60x60 Us Andrea Wiggins
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Blob NJ Broccoli Production

Created: 2011-09-14 02:04:44

Credits: User Andrea Wiggins

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Data input file for Problem 3 on Problem Set 3 for IST 600 at Syracuse University in Fall 2011.

File type: Excel workbook

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298?size=60x60 Us Andrea Wiggins
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Blob US Fertilizer Use

Created: 2011-09-14 01:35:28 | Last updated: 2011-09-14 01:35:29

Credits: User Andrea Wiggins

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Data input file for problem 3 in Problem Set 3 for IST 600 at Syracuse University in Fall 2011.

File type: Excel workbook

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4399?size=60x60 Gb Paul Fisher
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Blob Ondex Workflows

Created: 2011-09-01 17:17:57 | Last updated: 2011-09-01 17:18:05

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains a large number of Taverna 2 workflows that utilise the Ondex Web Service, for manipulating Ondex graphs.

File type: ZIP archive

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3230?size=60x60 Pl Piotr Hołubowicz
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Blob Test file for dLibra import

Created: 2011-08-17 15:35:06

Credits: User Piotr Hołubowicz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File created for testing import to dLibra, as a part of Wf4Ever. 

File type: JPEG image

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1505?size=60x60 Gb James Eales
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Blob kidney factomics nominalised triples in RDF

Created: 2011-07-14 22:04:54

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 The extracted triples (after nominalising the predicate) in RDFXML

File type: RDF data

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1505?size=60x60 Gb James Eales
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Blob kidney factomics triples in RDF

Created: 2011-07-14 21:58:57

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 The KUP triples in RDF XML

File type: RDF data

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Avatar Pradeepa thomas
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Blob flower

Created: 2011-07-14 16:30:12

Credits: User Pradeepa thomas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

flower

File type: JPEG image

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3035?size=60x60 De http://...
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Blob RapidMiner Workspace with Processes and Results from...

Created: 2011-07-14 13:21:27 | Last updated: 2011-07-14 13:21:28

Credits: User http://viswanathgs.myopenid.com/

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Operators used in experiments: Fast Correlation Based Filter (FCBF) Shrunken Centroids - Prediction Analysis for Microarrays (PAM) Backward Elimination via Hilbert-Schmidt Independence Criterion (BAHSIC) Dense Relevant Attribute Group Selector (DRAGS) Consesus Group Stable Feature Selector (CGS)   Datasets: Colon, SRBCT, SONAR

File type: ZIP archive

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1217?size=60x60 Gb Alan Williams
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Blob addthem.sh

Created: 2011-07-13 10:15:22

Credits: User Alan Williams User Steffen Möller

Attributions: Workflow External Tool: Numerically adding two values with 'bc'.

License: Creative Commons Attribution 3.0 Unported License

Shell script to be downloaded for tool

File type: UNIX script

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1505?size=60x60 Gb James Eales
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Blob list of biologically-themed journals

Created: 2011-06-30 00:56:28 | Last updated: 2011-06-30 00:56:50

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is a text file listing biological journals

File type: Plain text

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1505?size=60x60 Gb James Eales
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Blob Description of RapidMiner plugin video part 2

Created: 2011-06-06 11:56:45 | Last updated: 2011-06-06 11:57:42

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Simple text file listing the steps in part 2 of the video

File type: Plain text

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1505?size=60x60 Gb James Eales
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Blob Description of RapidMiner plugin video part 1

Created: 2011-06-06 11:55:39 | Last updated: 2011-06-06 11:56:18

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Simple text file listing the steps in part 1 of the video

File type: Plain text

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Avatar Ch Adam Woznica
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Blob Input data and background knowledge used in the KUP ...

Created: 2011-05-25 16:39:48

Credits: User Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Compressed RM repository directory containing input data and background knowledge used in the KUP data mining challenge (http://tunedit.org/challenge/ON)

File type: ZIP archive

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324?size=60x60 Gb George
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Blob **TUTORIAL ANNOUNCEMENT: Introduction to Implementin...

Created: 2011-05-24 15:56:58 | Last updated: 2011-05-24 15:56:59

Credits: User George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Normal 0 false false false MicrosoftInternetExplorer4 st1\:*{behavior:url(#ieooui) } /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:10.0pt; font-family:"Times New Roman"; mso-ansi...

File type: Word document

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Avatar Ch Adam Woznica
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Blob Plots fibrosis data (R script)

Created: 2011-05-23 13:02:34 | Last updated: 2011-05-24 20:27:58

Credits: User Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Plots a (modified) heatmap of the fibrosis gene data describing different genes used in various studies on fibrosis. The input dataset is prepared in the "prepare-fibrosis-data" RM workflow. Possible values in the input data are: 1 (a gene is Up regulated), -1 (Down regulated), 0 (Unmodified) and -2 (missing value). It requires the "gplots" R package.

File type: Trident (Package)

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Avatar Ch Adam Woznica
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Blob Plots an attribute similarity matrix on gene data (R...

Created: 2011-05-23 13:01:44 | Last updated: 2011-05-25 15:46:10

Credits: User Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Plots an attribute similarity matrix computed from the provided data frame. The input dataset is prepared in the "prepare-gene-correlation" RM workflow and is assumed to contain genes as rows, and gene functions and locations as columns. In the visualized matrix columns correspond to gene locations and rows correspond to gene functions. The supported types of attribute similarities are: the covariance, the Hamming distance, and a modified Hamming distance that focuses on columns wit...

File type: Trident (Package)

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Avatar Ch Adam Woznica
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Blob R library

Created: 2011-05-23 12:50:59 | Last updated: 2011-05-24 20:27:32

Credits: User Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

R library used by other R scripts.

File type: Trident (Package)

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Avatar Ch Adam Woznica
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Blob RM repository directory containing data

Created: 2011-05-23 12:49:04 | Last updated: 2011-05-24 20:26:36

Credits: User Adam Woznica

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Compressed directory from RM repository containing data used by the different workflows and R scirpts.

File type: ZIP archive

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2865?size=60x60 Ie Fbracken
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Blob Bracken McMahon & Whelan 2008

Created: 2011-05-21 11:09:23

Credits: User Fbracken

License: Creative Commons Attribution-Share Alike 3.0 Unported License

2008 paper in Bird Study examining the breeding bird communities of Irish peatland.

File type: Adobe PDF

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1505?size=60x60 Gb James Eales
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Blob attribute descriptions for article title training data

Created: 2011-05-20 23:04:48

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This PDF contains details of each attribute used in the article title classification.

File type: Adobe PDF

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1505?size=60x60 Gb James Eales
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Blob KUP titles cytoscape triple graph

Created: 2011-05-20 22:49:34 | Last updated: 2011-05-20 22:50:45

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is a cytoscape .cys file that contains the graph discussed in the paper. "An exercise in kidney factomics: From article titles to RDF knowledge base".

File type: Trident (Package)

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2628?size=60x60 Hr Matko Bošnjak
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Blob Datasets for the pack: RCOMM2011 recommender systems...

Created: 2011-05-05 21:18:51 | Last updated: 2011-05-06 12:13:22

Credits: User Matko Bošnjak User Ninoaf

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Dataset description: items This is a concatenated train and test set from ECML/PKDD Discovery Challenge 2011. Only ID and name attributes were used, other attributes are discarded because of the size of the dataset. This example set represents the content information for each of the items represented by an ID. user_history This is an example set consisting of randomly sampled IDs from items dataset. It represents the user's history - all the items (in this case lectures) he has viewed. u...

File type: ZIP archive

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1505?size=60x60 Gb James Eales
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Blob KUP titles triple graph

Created: 2011-04-22 04:50:45 | Last updated: 2011-05-20 16:04:57

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Largest connected component of RDF graph, visualised in Cytoscape, graph laid out using organic layout. Nodes represent unique subjects or objects and are sized by their number of edge connections

File type: Adobe PDF

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1505?size=60x60 Gb James Eales
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Blob attribute list for article title training data

Created: 2011-04-21 15:40:43

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is an html table listing the attributes derived from each title sentence

File type: htm

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1505?size=60x60 Gb James Eales
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Blob Training data for article title classification

Created: 2011-04-21 15:23:53 | Last updated: 2011-04-21 15:24:46

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is the training data used for article title classification

File type: Trident (Package)

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2763?size=60x60 Be Dr. Sven Van Poucke
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Blob Wound Image Data Mining

Created: 2011-04-17 14:00:45 | Last updated: 2011-05-04 12:35:28

Credits: User Dr. Sven Van Poucke

Attributions: Workflow Wound Image Data Mining Blob Wound Image Data Mining

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The aim of research behind this file is to discover the way our previously published color-calibration algorithm influences de detection and description of salient points. A recent paper can be found at: http://www.biomedcentral.com/1471-2342/10/7. Other work: Automatic Colorimetric Calibration of Chronic Wound Imaging. S. Van Poucke, Y. Vander Haeghen, K. Vissers, T. Meert, P. G. Jorens BMC Med Imaging. 2010 Mar 18;10:7 Comparative analysis of two methods for wound bed area measur...

File type: Trident (Package)

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Avatar Seroland
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Blob Budget Milestone v.3.7

Created: 2011-04-01 19:59:33 | Last updated: 2011-04-01 19:59:34

Credits: User Seroland

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Updated March 31, 2011

File type: Excel workbook

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4399?size=60x60 Gb Paul Fisher
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Blob Human Gene expression data -

Created: 2011-04-01 09:12:28 | Last updated: 2011-04-01 09:12:40

Credits: User Saeedeh

Attributions:

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list processed  for Human gene expression CEL files relating to the: Impact of NRSF variant over-expression in SK-N-AS human neuroblastoma cells (http://www.ebi.ac.uk/arrayexpress/browse.html?keywords=E-GEOD-22467&expandefo=on). The CEL files were analysed using the MADAT Taverna workflow available on myExperiment: http://www.myexperiment.org/workflows/2002.html

File type: ZIP archive

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4399?size=60x60 Gb Paul Fisher
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Blob Human Probeset data from Affymetrix

Created: 2011-04-01 09:08:45 | Last updated: 2011-04-01 09:08:51

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list or affymetrix probest identifiers for Human gene expression data relating to the: Impact of NRSF variant over-expression in SK-N-AS human neuroblastoma cells (http://www.ebi.ac.uk/arrayexpress/browse.html?keywords=E-GEOD-22467&expandefo=on)

File type: Plain text

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Avatar Morgan Taschuk
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Blob Drug Target FASTA

Created: 2011-03-30 10:51:26 | Last updated: 2011-04-01 13:10:05

Credits: User Morgan Taschuk User Andrewsmeaton

Attributions: Workflow Compile Protein FASTA from Target to Drug file

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 The FASTA file containing the protein sequences of the drug targets from Ondex.

File type: Plain text

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4399?size=60x60 Gb Paul Fisher
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Blob Taverna XPath practical slides .

Created: 2011-03-30 09:17:52 | Last updated: 2011-03-30 09:17:55

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Taverna training material for using and configuring XPath queries using native XPath Java methods, and XPath Service templates.

File type: PowerPoint presentation

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4399?size=60x60 Gb Paul Fisher
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Blob Taverna Iteration training slides

Created: 2011-03-28 11:44:06 | Last updated: 2011-03-28 11:44:08

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Training slides to outline how to use iterations and iteration strategies in Taverna

File type: PowerPoint presentation

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4399?size=60x60 Gb Paul Fisher
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Blob Bonn Taverna Training agenda March/April 2011

Created: 2011-03-28 11:31:38 | Last updated: 2011-03-28 11:31:39

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Agenda of Taverna training

File type: Word document

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4399?size=60x60 Gb Paul Fisher
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Blob Taverna Introduction

Created: 2011-03-28 11:29:08 | Last updated: 2011-03-28 11:29:10

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This powerpoint presentation contains a set of starting exercises for begining your Taverna training.

File type: PowerPoint presentation

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4399?size=60x60 Gb Paul Fisher
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Blob Example XML

Created: 2011-03-23 17:25:09 | Last updated: 2011-03-23 17:25:11

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains some example XML to be used for teaching material and XPath queries

File type: XML

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4399?size=60x60 Gb Paul Fisher
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Blob Schema for flat file cross-referencing

Created: 2011-03-23 17:00:58 | Last updated: 2011-03-23 17:01:01

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This powerpoint slide shows the how data in each flat file can be cross-reference to other flat file data items.

File type: PowerPoint presentation

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4399?size=60x60 Gb Paul Fisher
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Blob XML Result from Pubmed Search

Created: 2011-03-23 11:49:33 | Last updated: 2011-03-23 11:49:36

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This xml file conatins results from a pubmed search for 'Blood Clotting'.

File type: XML

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Avatar John Brookes
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Blob Simulation results

Created: 2011-03-23 09:52:21 | Last updated: 2011-03-23 09:52:24

Credits: User John Brookes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Results from the circle drawing functions RTL simulation.

File type: Trident (Package)

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4399?size=60x60 Gb Paul Fisher
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Blob Bilateral Perisylvian Polymicrogyria - Single Nucleo...

Created: 2011-03-17 11:21:06 | Last updated: 2011-03-17 11:21:12

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of all the SNP found with the Villard et al., (2002) QTL for Bilateral Perisylvian Polymicrogyria. Please download this data as you wish, and use in whatever study you like. The data is open access, and freely available for all to use to help undertand this condition. Genes related to these SNP can be found in the file http://www.myexperiment.org/files/466.

File type: ZIP archive

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4399?size=60x60 Gb Paul Fisher
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Blob Bilateral Perisylvian Polymicrogyria

Created: 2011-03-17 10:56:15 | Last updated: 2011-03-17 11:16:53

Credits: User Paul Fisher

Attributions: Workflow Pathway and Gene to Pubmed Workflow Pathways and Gene annotations forQTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of running a QTL workflow for Bilateral Perisylvian Polymicrogyria in human (homo sapiens). Provided are a list of candidate QTL genes (QTg) and their corresponding KEGG pathways. Each gene and pathway have been subsequently run through a series of text mining workflows to determine the significance each may play in relation to Bilateral Perisylvian Polymicrogyria. If you want to help me identify candidate genes for this disorder, please get i...

File type: ZIP archive

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3791?size=60x60 Gb David De Roure
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Blob Output from workflow 1943 on 2011-03-13 in CSV format

Created: 2011-03-13 11:31:21

Credits: User David De Roure

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 Output from http://www.myexperiment.org/workflows/1943 executed on 2011-03-13

File type: text/csv

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Avatar Gb Marie Brown
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Blob Automated Workflows for Accurate Mass-based Putative...

Created: 2011-03-03 15:27:04 | Last updated: 2011-03-03 15:27:07

Credits: User Marie Brown

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Three workflows, together defined as PUTMEDID-LCMS, have been developed using the open source Taverna environment to perform putative metabolite identification based on accurate mass data acquired from liquid chromatography-electrospray mass spectrometry instruments. Three workflows perform the following steps. (Step 1) Generation of a list of pairwise peak correlations required for input to workflow 2 (workflow 1) (Step 2) Annotation of features to group different ion types of the same metab...

File type: application/x-zip-compressed

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Avatar John Brookes
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Blob SVN commands for linux

Created: 2011-02-25 13:12:12 | Last updated: 2011-02-25 13:12:13

Credits: User John Brookes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

SVN commands for linux - basic operation only

File type: Adobe PDF

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4399?size=60x60 Gb Paul Fisher
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Blob Trichuriasis Induced Colitis

Created: 2011-02-16 15:16:17 | Last updated: 2011-02-16 15:16:24

Credits: User Paul Fisher

Attributions: Workflow Pathways and Gene annotations for RefSeq ids Workflow KEGG pathways common to both QTL and microarray based investigations Workflow Pathways and Gene annotations for QTL region Workflow Pathway and Gene to Pubmed

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of workflow runs for: identifying genes in each of the 7 QTL regions for Trichuris muris infection; identifying genes differentially expressed in mice challenged with Trichuris muris; and Text mining results (including cosine vector scores and Term Enrichment values).

File type: Trident (Package)

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2432?size=60x60 Us Mity
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Blob Fluid Dynamics Error

Created: 2011-01-14 18:26:24 | Last updated: 2011-01-14 18:26:25

Credits: User Mity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

People have been fooled by liquid levels for more than 270 years! Bernoulli's Principle mistakes!!

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