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460?size=60x60 Gb Will
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Blob Seeding cells protocol for OMERO.editor

Created: 2008-09-15 14:46:28 | Last updated: 2008-10-07 13:09:38

Credits: User Will

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 A simple demo protocol for OMERO.editor.  You can download OMERO.editor (as part of OMERO clients) from here.

File type: XML data

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3947?size=60x60 Gb Don Cruickshank
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Blob White noise

Created: 2007-11-22 15:31:12 | Last updated: 2009-07-08 16:57:59

License: GNU General Public License (GPL) 2.0

Perfect for headphones in a busy environment.

File type: Binary data

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4144?size=60x60 De Alexey Mints
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Blob Tools to split spatial N-dimensional data in cells o...

Created: 2016-10-19 09:31:56 | Last updated: 2018-06-29 09:12:04

Credits: User Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Documentation to follow later

File type: text/x-python

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4144?size=60x60 De Alexey Mints
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Blob Multiplot

Created: 2014-10-05 11:04:30 | Last updated: 2018-03-12 15:20:56

Credits: User Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

usage: multiplot.py [-h] [-x XCOLUMN] [-y COLUMNS] [-f FILES] [-o OUTPUT]                    [-s STYLE] [-xl XLABEL] [-yl YLABEL] [--log LOG]                    [-ltitles LEGENDTITLES] [-m MARKER] [-d DELIMITER]                    [--skip-header SKIP_HEADER] [-lp LEGEND_POSITION]Background calculatoroptional arguments:  -h, --help   &n...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Demographic data Cryptantha flava

Created: 2013-08-13 10:13:10 | Last updated: 2014-07-04 12:30:08

Credits: User Robcito

Attributions: Workflow Integral Projection Model for Demographic Modelling v34

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .csv file of one year demographic data of the species: Cryptantha flava, collected and published by Roberto Salguero-Gómez (University of Queensland).This file allow users to run Integral Projection Model workflow. http://www.myexperiment.org/workflows/3687.html Each row represents one observation of an organism in the population at one census time t with the following column names:size: size of individuals in census time tsizeNext: size of individual...

File type: Excel workbook

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4450?size=60x60 In Drkrish...
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Blob Industrial process for OXICONAZOLE Dr Krishnasarma P...

Created: 2012-07-24 11:38:44 | Last updated: 2013-06-21 09:49:15

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Industrial process for OXICONAZOLE Dr Krishnasarma PathyOxiconazole inhibits ergosterol biosynthesis, which is required forcytoplasmic membrane integrity of fungi. It acts to destabilize the fungal cyctochromeP450 51 enzyme (also known as Lanosterol 14-alpha demethylase). This is vital in thecell membrance structure of the fungus. Its inhibition leads to cell lysis. Oxiconazole hasalso been shown in inhibit DNA synthesis and suppress intracellular concentrations ofATP. Like other imidazole an...

File type: Adobe PDF

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688?size=60x60 Us M. Kirsh
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Blob The Path of Knowledge ; The Knowledge of Path - New ...

Created: 2010-03-31 05:35:36

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract   An unwitnessible silence is suggested to accompany all change. Conceptual paradox involving mind and matter, contrasting mind as an enduring state of the becoming of energy into a state of matter, and matter as the constantly becoming environment, is tested against criteria of witnessibility with respect to criteria for the existence of entities and phenomenon for consistency to capture an acceptably reasoned description, from a modern perspective, of cultural evolution....

File type: Adobe PDF

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469?size=60x60 Gb Paolo
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Blob EDBT Provenance talk presentation - PFD version

Created: 2010-03-26 14:01:00 | Last updated: 2010-03-26 14:02:09

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

PDF version -- see related pack for Native Keynote link to paper link to conference proceedings  

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Avatar Architpuri
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Blob test

Created: 2010-03-08 14:43:10

Credits: User Architpuri

License: Creative Commons Attribution-Share Alike 3.0 Unported License

test

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688?size=60x60 Us M. Kirsh
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Blob THE PATH OF KNOWLEDGE : KNOWLEDGE OF THE PATH

Created: 2010-02-22 00:21:43

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract       The philosophies of Parmenides, Socrates, Aristotle, the science of Einstein is discussed with respect to a division of the empirical and abstracted as they refer to the universe and universals. Methodologies of the natural and anthropological sciences are contrasted  in order to discuss validity in the representation of nature. A physical model for the evolution of knowledge is presented that distinguishes both the conceptual and physical in terms of...

File type: Adobe PDF

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688?size=60x60 Us M. Kirsh
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Blob Introduction to My Presented Works-Marvin E. Kirsh

Created: 2010-02-15 01:10:45 | Last updated: 2010-02-15 04:40:32

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

    An introductory  background and stated approach with initial assumptions employed towards the creation of my manuscripts and ideas.  My notions reflect a naturalism,  with a slant oriented from the realism of perception, away from abstracted theory that is given its' only validity from empirical test rather than direct first person witness. I began this project as a graduate student in the biological sciences with a statement from a professor of classical g...

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688?size=60x60 Us M. Kirsh
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Blob Physical Contiguity of "The Concept" : The Concept o...

Created: 2010-02-05 03:37:55 | Last updated: 2010-02-05 19:31:11

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract It is an entity of nature,  the human conceiver that emerges ?the concept?. It might be conjectured that in order for  a human  conceiver to conceive a concept of ?the concept?, as a subset of nature, first he must have a concept of nature with which to commence investigation into the nature of ?the  concept?.  Second,  the nature of ?the concept? might be expected to be an emergence from the individuals? concept of nature; in essence to reflect a conce...

File type: Adobe PDF

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688?size=60x60 Us M. Kirsh
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Blob Uniqueness, Self Belonging and Intercourse in Nature...

Created: 2010-01-09 04:42:06

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract Biological organization is discussed within a holistic framework . A new orientation is presented of natural processes with  an approach in model construction that is focused strictly on physical form and centered away from abstractions that escape the perceptual senses,  lead towards the postulation of non-verifiable and non-witnessible  entities.  A universal construction composed of first perspective representations of path, witness as unique loci in volumes o...

File type: Adobe PDF

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688?size=60x60 Us M. Kirsh
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Blob What Happened? Are We Asking or Telling?

Created: 2010-01-02 04:12:38

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract      A conceptual parallel is created between studies in anthropology and natural science.  A  space occupied by “the conceptualization”  is argued to not only parallel  symbolically the scientifically conceived value of volume as space, but to have an equal meaning- the spaces of the conceptual ordering of nature as manifestations of energy are held to be paralleling  manifestations of the same energies that mold the environm...

File type: Adobe PDF

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45?size=60x60 Gb David R Newman
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Blob NeuroHub Presentation to Southampton Neuroscientists

Created: 2009-11-26 11:59:43

Credits: User David R Newman

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This presentation was given on 19th November 2009 to allow the the neuroscientists in Southampton to get an overview of what we NeuroHub intended to do and get feedback to find out what they would and wouldn't find useful.

File type: PowerPoint presentation

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688?size=60x60 Us M. Kirsh
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Blob Anthropology and Parallelism: The Individual as a Un...

Created: 2009-11-15 19:52:10

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract It is difficult to define perspective within sets that are self belonging. For example in the study of man­kind, anthropology, both men and their studies fall into the same category that contains the topic out­line. This situation entails a universal quality of uniqueness, an instance of it, to the topic of anthropo­logy that may be viewed in parallel with the topic of nature as the set of unique particulars. Yet one might assent to the notion in the inclusive study of m...

File type: Adobe PDF

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324?size=60x60 Gb George
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Blob Kegg Gene Identifiers

Created: 2009-11-14 16:29:01

Credits: User George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

An example file of a list of Kegg gene identifiers used to test searching the Kegg database.

File type: Plain text

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324?size=60x60 Gb George
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Blob Pubmed Identifiers

Created: 2009-11-14 16:23:47

Credits: User George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A list of example pubmed identifers to use when testing abstract retrieval and text-mining workflows

File type: Plain text

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Avatar Gb Andrea
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Blob Very simple script to fix pathway commons biopax files

Created: 2009-11-04 11:05:46

Credits: User Andrea

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This very simple script (it only replace one type of ID!) will fix BioPAX files coming from PathwayCommons. In this files, rdf:ID is used instead of rdf:about, and since these files contains repetition, this results in an error in strict parsers. This error gets undetected in many system as they disable replicated ID checking for performance, but it's still a problem in some.

File type: application/x-perl

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4399?size=60x60 Gb Paul Fisher
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Blob KEGG Compounds to Inchi strings

Created: 2009-11-02 16:15:39 | Last updated: 2009-11-02 16:15:57

Credits: User Paul Fisher User Paul Dobson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of KEGG compounds which are reffered to by their Inchi strings.

File type: Chemistry Plan

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728?size=60x60 Nl Barend
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Blob The general plan and guidelines for BioAssist from O...

Created: 2009-10-26 10:15:03

Credits: User Barend

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document has been accepted at the NBIC management team meeting of 22 October 2009, and will serve as ageneral guideline to run the BioAssist program of NBIC. It might be a good idea to read the short document before you contact BioAssist for support in the scope of your 'code' or 'content' interests. Barend Mons

File type: application/x-download

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728?size=60x60 Nl Barend
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Blob nano publication as a way to explain rich triples

Created: 2009-10-23 07:32:36 | Last updated: 2009-10-25 20:38:34

Credits: User Barend User Jan Velterop Network-member Concept Web Alliance (general)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This paper can be used to explain what triples in our context are meant to be and to serve I will present the paper on the semantic web conference workshop 26th of November

File type: application/x-download

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4399?size=60x60 Gb Paul Fisher
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Blob Ondex and Taverna Tutorial

Created: 2009-10-22 13:50:53 | Last updated: 2009-10-22 13:51:51

Credits: User George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Biological Data Integration Using Ondex and Taverna: A Tutorial 25/26th November 2009 The University of Manchester The Ondex SABR project (http://ondex.org/sabr.html) invite you to a two-day tutorial that aims to show participants how to use Ondex and Taverna to perform common biological data collection, integration and visualisation tasks.

File type: Word document

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688?size=60x60 Us M. Kirsh
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Blob Physical Contiguism

Created: 2009-10-18 05:28:32

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

The topic of physical contiguism is proposed in description to bridge paradoxes of mind and matter.  It seems that in efforts to bridge topics of science and consciousness focus has drifted towards a means to accommodate the mind in physical terms in order to draw correspondances with the more readily studied topic of matter. – i.e. as a topic in brain science. 

File type: Adobe PDF

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688?size=60x60 Us M. Kirsh
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Blob The Bend : A Speculation on History and Science

Created: 2009-09-20 04:08:33

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

The age of human civilization is given the name “the bend” based on a re-examination of the emergence of science, science theory content, and history.</font></font>  Civilization, existing over its course, in  darkness to the  nature of its partnership with the elements, oscillates in a romance that alternates between logical explanation, the rational, and illogical as they are  presented to him from the external. Its&rsquo...

File type: Adobe PDF

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