Workflows

VOTable of NED Images from a List of Objects (1)

• Download

Extraction of metadata using NED Image Virtual Observatory Service into a single VOTable, providing a list of objects and the width for each field in arcmin. Among the most relevant metadata are the URL link to the FITS images. This Wf makes use of a Tool developed as an internal pyhton script file.

Created: 2012-07-01 | Last updated: 2012-07-01

Credits: Jose Enrique Ruiz

Attributions: Astronomical object name to equatorial coordinates Resolver

Astronomical object name to equatorial coo... (1)

• Download

 Resolve equatorial coordinates of a list of objects (names) with AstroTaverna plugin

Created: 2012-06-30 | Last updated: 2012-07-01

Credits: Jose Enrique Ruiz

Simple executable plan example (1)

• Download

A simple executable plan containing a migration action component and a QA component. The migration action uses imagemagick convert. The QA component consists of two characterisation components (fits) and another QA components (imagemagick compare).

Created: 2012-06-29

Credits: Markus Plangg

VOTables from NED Web Services (1)

• Download

Extraction of a sample of VOTables from all the NED Web Services present in paper 2007ASPC..382..165M Web-based Tools - NED VO Services (Mazzarella, J. M.; NED Team). The National Virtual Observatory: Tools and Techniques for Astronomical Research. ASP Conference Series, Vol. 382. Edited by M.J. Graham, M.J. Fitzpatrick, and T.A. McGlynn. San Francisco: Astronomical Society of the Pacific, 2007., p.165

Created: 2012-06-28 | Last updated: 2013-04-12

Credits: Jose Enrique Ruiz

SNP_ID2EntrezGene_ID (4)

• Download

Purpose: The workflow maps a SNP (dbSNP id) to a gene (EntrezGene id). Author comments: The window for gene inclusion can be set using the set_width parameter. This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Created: 2012-06-26 | Last updated: 2013-03-11

Credits: Kristina Hettne Harish Dharuri

Online update recommendation web service V2 (1)

• Download

 After some arbitrary number of recommendations to specific users, system has to update recommendations in item recommendation table. This is accomplished by calling the online update recommendation web service, which updates the recommendation model in RapidAnalytics repository and updates the recommendations for specific users in item recommendation table.

Created: 2012-06-20 | Last updated: 2012-06-20

Offline update recommendation web service V2 (1)

• Download

  Periodically we have to do a full re-training on whole train set by the offline update recommendation web service.

Created: 2012-06-20 | Last updated: 2012-06-20

Gene enhancer region analysis (1)

• Download

 This Galaxy pipeline searches for transciption factor binding sites which are conserved through to Fugu. It then finds genes associated with these enhancer binding sites. See http://screencast.g2.bx.psu.edu/MAF_manipulation for the screencast that describes how this workflow is developed.

Created: 2012-06-14 | Last updated: 2012-07-06

Advanced FastQ manipulation (1)

• Download

 This Galaxy workflow performs advanced FastQ manipulation as demonstrated by the screencast at http://screencast.g2.bx.psu.edu/quickie_14_fastq_adv/flow.html. Given a FastQ set of data, it will be transformed using the tools, Groomer, Filter FastQ, FastQ Trimmer, Manipulate FastQ before it is finally converted into FASTA format.

Created: 2012-06-14 | Last updated: 2012-06-14

Perform QC on FastQ data (1)

• Download

 This Galaxy pipeline performs quality control analyses on FastQ data. A report is generated which provides various measures of the quality of the sequence reads.

Created: 2012-06-14 | Last updated: 2012-06-14