Gene enhancer region analysis

Created: 2012-06-14 09:20:21 Last updated: 2012-07-06 12:40:25

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This Galaxy pipeline searches for transciption factor binding sites which are conserved through to Fugu. It then finds genes associated with these enhancer binding sites. See http://screencast.g2.bx.psu.edu/MAF_manipulation for the screencast that describes how this workflow is developed.

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Inputs (2)

Name	Description
Input Dataset
Input Dataset

Steps (7)

Name	Tool	Description
Input dataset	None
Input dataset	None
Merge	gops_merge_1
Get flanks	get_flanks1
MAF Coverage Stats	maf_stats1
Filter	Filter1
Join	gops_join_1

Outputs (5)

Name	Type
output	input
out_file1	interval
out_file1	interval
out_file1	input
output	interval

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Galaxy

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Peter Li

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Gene enhancer region analysis

Created by Peter Li on Thursday 14 June 2012 09:20:21 (UTC)

Last edited by Peter Li on Thursday 14 June 2012 09:23:25 (UTC)

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