Advanced FastQ manipulation

Created: 2012-06-14 08:28:07 Last updated: 2012-06-14 08:33:29

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This Galaxy workflow performs advanced FastQ manipulation as demonstrated by the screencast at http://screencast.g2.bx.psu.edu/quickie_14_fastq_adv/flow.html. Given a FastQ set of data, it will be transformed using the tools, Groomer, Filter FastQ, FastQ Trimmer, Manipulate FastQ before it is finally converted into FASTA format.

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Workflow Components

Inputs (1)

Name	Description
Input Dataset

Steps (6)

Name	Tool	Description
Input dataset	None
FASTQ Groomer	fastq_groomer
Filter FASTQ	fastq_filter
FASTQ Trimmer	fastq_trimmer
Manipulate FASTQ	fastq_manipulation
FASTQ to FASTA	fastq_to_fasta_python

Outputs (5)

Name	Type
output_file	fastqsanger
output_file	input
output_file	input
output_file	input
output_file	fasta

Information Workflow Type

Galaxy

Information Uploader

Peter Li

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All versions of this Workflow are not licensed.

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Information Statistics

1256 viewings

718 downloads

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Advanced FastQ manipulation

Created by Peter Li on Thursday 14 June 2012 08:28:07 (UTC)

Last edited by Peter Li on Thursday 14 June 2012 08:33:29 (UTC)

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