Workflows

Basic RNA-Seq Analysis - Differential Expr... (1)

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From the RNA-Seq analysis tutorial during the Functional Genomics Workshop 2012 https://caps.osu.edu/pfg-workshop Workflow published by mejia-guerra on Galaxy Jun 22, 2012 imported to myExperiment Jul16, 2012 during demonstration of Galaxy-myExperiment integration  

Created: 2012-07-16 | Last updated: 2012-07-16

AnnotationTimes (1)

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This very simple workflow was used in the analysis of the metadata produced by the human annotation phase of the SALAMI (Strucural Analysis of Large Amounts of Music Inforamtion) project.  The input data is the metadata available from http://ddmal.music.mcgill.ca/salami/annotations It produces a histogram of song durations and scatterplot of combined annotation time verus song duration. The fields are   SONG_ID                   Un...

Created: 2012-07-16 | Last updated: 2012-07-16

Example of how to use Sesame service and V... (1)

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This workflow needs as input a list of names of galaxies. Then it queries Sesame services to get the coordinates of this galaxies, and finally with this coordinates queries a Virtual Observatory Services (a cone service).

Created: 2012-07-14

Gene to Pathways (Vistrails) (1)

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This is a Vistrails workflow that returns the pathways of a given gene ID. In doing so, it uses two kegg services.

Created: 2012-07-10

Credits: Khalid Belhajjame

Gene to Pathways (1)

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This is a Taverna workflow that given a gene ID fetches the corespondondings pathways. To do so, the workflow make use of two KEGG web services.

Created: 2012-07-09 | Last updated: 2012-07-10

Credits: Khalid Belhajjame

List Concept Sets (3)

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Pupose: The workflow returns a list of all Concept Set IDs currently available in the database. The Concept Sets have an hierarchical structure that can be inferred by referring to the parent Concept Set ID.

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: Kristina Hettne Marco Roos Reinout van Schouwen Martijn Schuemie BioSemantics

Get concept information (5)

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The workflow takes a (list of) concept ID(s) as input and returns the profile, ID, definition and name of the concept.

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: Kristina Hettne Reinout van Schouwen Marco Roos Martijn Schuemie BioSemantics

Get Concept IDs (5)

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Purpose: The workflow retrieves the concepts within a concept set. The Web service/workflow currently returns no values (bug).

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: Kristina Hettne Reinout van Schouwen Martijn Schuemie Marco Roos BioSemantics

Task Data Pattern (BeanShell) (1)

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This is a sample implementation of "Task Data" pattern intoduced workflowPatterns.com It defines a variable inside a Beanshell and uses the passed value through the processors input. Details: http://www.workflowpatterns.com/patterns/data/visibility/wdp1.php

Created: 2012-07-06

Get all applications available on the HPS (1)

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This workflow requests all available applications on the HPS which do not require authentication to run. No inputs. Outputs contain all information to execute the application on the HPS such as the ID of the application and the names of all parameters.

Created: 2012-07-03

Credits: Anja Le Blanc