Multiple Protein Alignment Profiling(1)

Created: 2010-01-13 18:52:45 Last updated: 2010-11-17 14:13:20

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Designed from an example workflow at Traverna, this workflow retrieves a set of sequences from UniProt, then simultaneously scans for transmembrane regions and performs a multiple alignment using EMMA. The alignment is then plotted to a set of PNG images, followed by a profile analysis using prophecy and prophet tools.

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Information Workflow Type

BioExtract Server

Information Uploader

Carol Lushbough

Information License

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Information Version 3 (of 4)

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A workflow version of the EMBOSS tutorial

Information Tags (7)

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alignment
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ebi
|
emma
|
genomics
|
prettyplot
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profile
|
tmap

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Information Statistics

5435 viewings

1692 downloads

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Version History

In chronological order:

A BioExtract Server Workflow version of the EMBOSS tutorial

Created by Carol Lushbough on Thursday 15 January 2009 14:37:01 (UTC)

Last edited by Carol Lushbough on Monday 08 June 2009 10:30:48 (UTC)
A BioExtract Server Workflow version of the EMBOSS tutorial

Created by Carol Lushbough on Thursday 20 August 2009 13:51:19 (UTC)

Last edited by Carol Lushbough on Wednesday 06 January 2010 22:07:49 (UTC)
Multiple Protein Alignment Profiling

Created by Carol Lushbough on Wednesday 13 January 2010 18:52:45 (UTC)

Last edited by Carol Lushbough on Wednesday 17 November 2010 14:11:37 (UTC)

Revision comment:

Functionality was added to allow the workflow to be executed within myExperiment
Multiple Protein Alignment Profiling(1)

Created by Carol Lushbough on Wednesday 17 November 2010 14:13:19 (UTC)

Revision comment:

Updated query to definition= opsin-2

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