Multiple Protein Alignment Profiling(1)

Created: 2010-01-13 18:52:45 Last updated: 2010-11-17 14:13:20

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This workflow may be downloaded and imported into the BioExtract Server at bioextract.org.

This workflow is designed to demonstrate the use of EMBOSS based Soaplab services from within the BioExtract Server. It begins by querying UniProt for "ops2_*". This input query string may be modified to meet the needs of the researcher. A sequences resulting in the query are simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

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Information Workflow Type

BioExtract Server

Information Uploader

Carol Lushbough

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Information Version 1 (earliest) (of 4)

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A workflow version of the EMBOSS tutorial

Information Tags (7)

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alignment
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ebi
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emma
|
genomics
|
prettyplot
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profile
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tmap

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Information Statistics

5424 viewings

1690 downloads

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Version History

In chronological order:

A BioExtract Server Workflow version of the EMBOSS tutorial

Created by Carol Lushbough on Thursday 15 January 2009 14:37:01 (UTC)

Last edited by Carol Lushbough on Monday 08 June 2009 10:30:48 (UTC)
A BioExtract Server Workflow version of the EMBOSS tutorial

Created by Carol Lushbough on Thursday 20 August 2009 13:51:19 (UTC)

Last edited by Carol Lushbough on Wednesday 06 January 2010 22:07:49 (UTC)
Multiple Protein Alignment Profiling

Created by Carol Lushbough on Wednesday 13 January 2010 18:52:45 (UTC)

Last edited by Carol Lushbough on Wednesday 17 November 2010 14:11:37 (UTC)

Revision comment:

Functionality was added to allow the workflow to be executed within myExperiment
Multiple Protein Alignment Profiling(1)

Created by Carol Lushbough on Wednesday 17 November 2010 14:13:19 (UTC)

Revision comment:

Updated query to definition= opsin-2

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