Multiple Protein Alignment Profiling(1)

Created: 2010-01-13 18:52:45 Last updated: 2010-11-17 14:13:20

Download Workflow

This workflow may be downloaded and imported into the BioExtract Server at bioextract.org.

This workflow is designed to demonstrate the use of EMBOSS based Soaplab services from within the BioExtract Server. It begins by querying UniProt for "ops2_*". This input query string may be modified to meet the needs of the researcher. A sequences resulting in the query are simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

Preview

Run

Run this Workflow in the BioExtract Server...

Launch in BioExtract Server

Workflow Components

Not available

Information Workflow Type

BioExtract Server

Information Uploader

Carol Lushbough

Information License

All versions of this Workflow are licensed under:

Information Version 1 (earliest) (of 4)

Information Credits (2)

(People/Groups)

Information Attributions (1)

(Workflows/Files)

A workflow version of the EMBOSS tutorial

Information Tags (7)

Uploader tags

alignment
|
ebi
|
emma
|
genomics
|
prettyplot
|
profile
|
tmap

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

5425 viewings

1690 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

A BioExtract Server Workflow version of the EMBOSS tutorial

Created by Carol Lushbough on Thursday 15 January 2009 14:37:01 (UTC)

Last edited by Carol Lushbough on Monday 08 June 2009 10:30:48 (UTC)
A BioExtract Server Workflow version of the EMBOSS tutorial

Created by Carol Lushbough on Thursday 20 August 2009 13:51:19 (UTC)

Last edited by Carol Lushbough on Wednesday 06 January 2010 22:07:49 (UTC)
Multiple Protein Alignment Profiling

Created by Carol Lushbough on Wednesday 13 January 2010 18:52:45 (UTC)

Last edited by Carol Lushbough on Wednesday 17 November 2010 14:11:37 (UTC)

Revision comment:

Functionality was added to allow the workflow to be executed within myExperiment
Multiple Protein Alignment Profiling(1)

Created by Carol Lushbough on Wednesday 17 November 2010 14:13:19 (UTC)

Revision comment:

Updated query to definition= opsin-2

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.