Genome annotation pipeline demonstrator workflow for Nucleic Acids Research

Created: 2007-10-03 18:35:47

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Option 1:

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http://www.myexperiment.org/workflows/6/download?version=1
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Inputs (0)

Processors (8)

Name	Type	Description
GI_number	stringconstant
BLASTp	stringconstant
SWISS	stringconstant
Get_Nucleotide_FASTA	local
BLAST	arbitrarywsdl
genscan	soaplabwsdl	Runs genscan on the input sequence
repeatmasker	soaplabwsdl	Screens for low complexity DNA sequences and interspersed repeats
genscansplitter	soaplabwsdl	Runs genscan on the input sequence

Beanshells (0)

Outputs (5)

Links (12)

Source	Sink
BLASTp:value	BLAST:program
GI_number:value	Get_Nucleotide_FASTA:id
Get_Nucleotide_FASTA:outputText	repeatmasker:sequence_direct_data
SWISS:value	BLAST:database
genscan:output	genscansplitter:scanrecord_direct_data
genscansplitter:peptide	BLAST:query
repeatmasker:masked	genscan:sequence_direct_data
BLAST:Result	blast_out
genscansplitter:coding	cds
genscansplitter:coding	genscan_report
genscansplitter:peptide	peptides
repeatmasker:report	RepeatMasker_report