Filter concepts with profiles

Created: 2012-09-14 10:14:12 Last updated: 2014-07-14 10:12:32

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Purpose: Filter a list of concept id(s) by returning only those with a concept profile in the database.

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Authors (1)

Titles (1)

Descriptions (1)

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Inputs (1)

Name	Description
Concept_ID	The input concept ID(s) (Erasmus MC ontology format).

Processors (8)

Name	Type	Description
filterConceptsWithProfile	wsdl	This Web service operation takes a (list of) concepts as input and returns the concept IDs of those with a profile. Wsdl http://ws.biosemantics.org/ConceptProfileMiningService?wsdl Wsdl Operation filterConceptsWithProfile
filterConceptsWithProfile_output	xmlsplitter
filterConceptsWithProfile_return	xmlsplitter
filterConceptsWithProfile_input	xmlsplitter
Filter_List_of_Strings_by_regex	localworker	This service filters the list at every occurrence of the specified regular expression. The regular expression provided in this case is an empty string: ^\S+$ Script filteredlist = new ArrayList(); for (Iterator i = stringlist.iterator(); i.hasNext();) { String item = (String) i.next(); if (item.matches(regex)) { filteredlist.add(item); } }
regex_value	stringconstant	The regular expression to be used for filtering. In this case: ^\S+$ Value ^\S+$
Split_string_into_string_list_by_regular_expression	localworker	Split on newline (\n) character. Script List split = new ArrayList(); if (!string.equals("")) { String regexString = ","; if (regex != void) { regexString = regex; } String[] result = string.split(regexString); for (int i = 0; i < result.length; i++) { split.add(result[i]); } }
regex_value_1	stringconstant	Split on newline (\n) character. Value \n

Beanshells (0)

Outputs (1)

Name	Description
Concepts_with_profiles	Concept ID(s) (Erasmus MC ontology format) with profiles.

Datalinks (9)

Source	Sink
filterConceptsWithProfile_input:output	filterConceptsWithProfile:parameters
filterConceptsWithProfile:parameters	filterConceptsWithProfile_output:input
filterConceptsWithProfile_output:return	filterConceptsWithProfile_return:input
Split_string_into_string_list_by_regular_expression:split	filterConceptsWithProfile_input:conceptSet
regex_value:value	Filter_List_of_Strings_by_regex:regex
filterConceptsWithProfile_return:conceptIDsAsString	Filter_List_of_Strings_by_regex:stringlist
Concept_ID	Split_string_into_string_list_by_regular_expression:string
regex_value_1:value	Split_string_into_string_list_by_regular_expression:regex
Filter_List_of_Strings_by_regex:filteredlist	Concepts_with_profiles

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Information Workflow Type

Taverna 2

Information Uploader

Kristina Hettne

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Information Version 4 (latest) (of 4)

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Information Statistics

2978 viewings

1349 downloads

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Version History

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Filter concepts with profiles

Created by Kristina Hettne on Friday 14 September 2012 10:14:12 (UTC)

Last edited by Kristina Hettne on Friday 14 September 2012 10:18:40 (UTC)
Filter concepts with profiles

Created by Kristina Hettne on Friday 14 September 2012 13:37:07 (UTC)
Filter concepts with profiles

Created by Kristina Hettne on Tuesday 05 February 2013 20:27:00 (UTC)

Last edited by Kristina Hettne on Tuesday 05 February 2013 20:28:57 (UTC)
Filter concepts with profiles

Created by Kristina Hettne on Monday 14 July 2014 10:12:32 (UTC)

Revision comment:

Updates examples to reflect the latest concept database update.

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Filter concepts with profiles

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