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Filter concepts with profiles

Created: 2012-09-14 10:14:12      Last updated: 2014-07-14 10:12:32

Purpose: This workflow can be used to check if a concept has a concept profile in the database.

Author comments:

This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

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Taverna 2

Information Uploader

3772?size=60x60 Nl Kristina Hettne

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Information Statistics

2971 viewings

1348 downloads

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Version History

In chronological order:

  1. Filter concepts with profiles

    Created by Kristina Hettne on Friday 14 September 2012 10:14:12 (UTC)

    Last edited by Kristina Hettne on Friday 14 September 2012 10:18:40 (UTC)

  2. Filter concepts with profiles

    Created by Kristina Hettne on Friday 14 September 2012 13:37:07 (UTC)

  3. Filter concepts with profiles

    Created by Kristina Hettne on Tuesday 05 February 2013 20:27:00 (UTC)

    Last edited by Kristina Hettne on Tuesday 05 February 2013 20:28:57 (UTC)

  4. Filter concepts with profiles

    Created by Kristina Hettne on Monday 14 July 2014 10:12:32 (UTC)

    Revision comment:

    Updates examples to reflect the latest concept database update.



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Workflow Other workflows that use similar services (18)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Taverna 2
Uploader
30?size=60x60 Nl Marco Roos

Workflow DatabaseID to ConceptID (7)

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Purpose: This workflow maps input Identifiers, common database identifiers, to the Concept Identifiers from the EMC ontology. Result: Concept Identifiers from the EMC ontology. Comments: Database: one of CAS, DRUG, etc. The supported databases are listed below (database, description, example). CAS, Chemical Abstracts Service registry number, 64-17-5. DRUG, Drug Bank, DB00316. AF, Affymetrix, 200007_at. CHEB, ChEBI, 16236. CHID, ChemIDplus, 0000050000. EG, Entrez-Gene, 3064. GO, Gene Ontol...

Created: 2012-06-25 | Last updated: 2014-07-14

Credits: User Marco Roos User Martijn Schuemie User Reinout van Schouwen Network-member BioSemantics

Taverna 2
Uploader
2286?size=60x60 Nl Reinout van Schouwen

Workflow Explain concept scores (7)

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Purpose of workflow: This workflow takes two concept ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the pe...

Created: 2012-02-07 | Last updated: 2014-07-14

Credits: User Reinout van Schouwen

Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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