Sff2Fasta_Blast_Blat_ParseBlast

Created: 2010-09-22 13:22:57 Last updated: 2010-09-22 13:36:12

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Blast and Blat Roche 454 sequences against a reference database on the Dutch Life Science Grid

Conversion of Roche 454 sequences to fasta
Blat sequences against a database
Blast sequences against a database
Parse Blast results

http://www.bioinformaticslaboratory.nl/

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Workflow Components

Inputs (3)

Name	Description
SffFile
DatabaseFastaGz
MaxBlastHitsPerEntry

Processors (8)

Name	Type	Description
config_Blast	stringconstant
config_Sff2Fasta	stringconstant
config_Blat	stringconstant
Sff2Fasta	arbitrarywsdl	Service definition of function ns__GASWexecution
Blast	arbitrarywsdl	Service definition of function ns__GASWexecution
Blat	arbitrarywsdl	Service definition of function ns__GASWexecution
ParseBlast	arbitrarywsdl	Service definition of function ns__GASWexecution
config_ParseBlast	stringconstant

Beanshells (0)

Outputs (6)

Name	Description
FastaFile
QualFile
FlowFile
BlastOutTarGz
BlatOutTarGz
ParsedBlastTxt

Links (17)

Source	Sink
DatabaseFastaGz	Blast:input1
DatabaseFastaGz	Blat:input1
MaxBlastHitsPerEntry	ParseBlast:input0
SffFile	Sff2Fasta:input0
Blast:result0	ParseBlast:input1
ParseBlast:result0	ParsedBlastTxt
Sff2Fasta:result0	Blast:input0
Sff2Fasta:result0	Blat:input0
config_Blast:value	Blast:config-file
config_ParseBlast:value	ParseBlast:config-file
config_Sff2Fasta:value	Sff2Fasta:config-file
Blast:result0	BlastOutTarGz
Blat:result0	BlatOutTarGz
Sff2Fasta:result0	FastaFile
Sff2Fasta:result1	QualFile
Sff2Fasta:result2	FlowFile
config_Blat:value	Blat:config-file

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Information Workflow Type

Taverna 1

Information Uploader

Barbera van Schaik

Information License

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Information Version 1 (of 1)

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Information Tags (10)

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alignment
|
BLAST
|
blat
|
conversion
|
DNA
|
grid
|
moteur
|
sequence
|
taverna
|
vbrowser

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Information Statistics

2228 viewings

1713 downloads

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Version History

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Sff2Fasta_Blast_Blat_ParseBlast

Created by Barbera van Schaik on Wednesday 22 September 2010 13:22:57 (UTC)

Last edited by Barbera van Schaik on Wednesday 22 September 2010 13:36:12 (UTC)

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