feat

Created: 2008-03-18 16:40:42 Last updated: 2008-05-19 15:56:35

This is an attempt to implement the feat application from the fsl fMRI package www.fmrib.ox.ac.uk/fsl/fsl/whatsnew.html into a Scufl workflow. Details are still being polished but the general structure is here. The main problem that we have with such workflows concerns data provenance. Each of the services is typically iterated on hundreds of data sets and keeping track of the produced files is a pain.

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Information Workflow Type

Taverna 1

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Glatard

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Glatard

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medical imaging

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2712 viewings

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feat fsl workflow

Created by Glatard on Tuesday 18 March 2008 16:40:42 (UTC)

Last edited by Glatard on Tuesday 18 March 2008 16:45:35 (UTC)
feat fsl workflow

Created by Glatard on Tuesday 18 March 2008 16:40:42 (UTC)

Last edited by Glatard on Tuesday 25 March 2008 19:09:21 (UTC)

Revision comment:

some minor corrections
feat

Created by Glatard on Tuesday 18 March 2008 16:40:42 (UTC)

Last edited by Glatard on Monday 19 May 2008 15:56:35 (UTC)

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Other workflows that use similar services (8)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Glatard

feat FSL group analysis (1)

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This workflow is to be run on results obtained from this one (couldn't manage to find a clean solution for merging those two in Scufl). Processor "feat_group": 1. builds the experiment intput (design) file from template and input parameters 2. calls feat FSL Processor "roi" reads activation maps produced by feat_group, extract a region of interest and compute the mean, stdev, max and min activation within it. Here is a sample input in VBrowser's XML dialect. Below is...

Created: 2009-01-28 | Last updated: 2009-01-28

Credits: Glatard

Taverna 1

Uploader

Glatard

caviar cardiac application (1)

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Applications details in the following paper: Ketan Maheshwari, Tristan Glatard, Joel Schaerer, Bertrand Delhay, Sorina Camarasu, Patrick Clarysse, Johan Montagnat. "Towards Production-level Cardiac Image Analysis with Grids" in Proceedings of the HealthGrid'09, Berlin, 28-30 june 2009 The 3 green boxes are run on the EGEE grid. Addional Beanshells have been added to transfer results from EGEE Storage Elements to a web server, to allow for better interactivity.

Created: 2009-05-23 | Last updated: 2009-05-23

Credits: Glatard