Sample grid workflow

Created: 2008-10-24 14:30:25 Last updated: 2008-10-31 12:13:23

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This is a sample workflow submitting jobs to the EGEE grid using the Generic Application Service Wrapper (GASW). The job submission service has to be installed locally.

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http://www.myexperiment.org/workflows/545/download?version=1
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Workflow Components

Inputs (2)

Name	Description
yourName
file

Processors (3)

Name	Type	Description
hello	arbitrarywsdl
empty	stringconstant
helloDescription	stringconstant

Beanshells (0)

Outputs (1)

Name	Description
message

Links (8)

Source	Sink
empty:value	hello:command-line
file	hello:input1
empty:value	hello:input2
empty:value	hello:input3
empty:value	hello:input4
helloDescription:value	hello:config-file
yourName	hello:input0
hello:result0	message

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Information Workflow Type

Taverna 1

Information Uploader

Glatard

Information License

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Information Version 1 (of 1)

Information Credits (1)

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Glatard

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Information Statistics

2145 viewings

1908 downloads

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Sample grid workflow

Created by Glatard on Friday 24 October 2008 14:30:25 (UTC)

Last edited by Glatard on Friday 31 October 2008 12:13:24 (UTC)

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Glatard	Friday 24 October 2008 14:30:45 (UTC)
	this is super cool

Other workflows that use similar services (7)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Glatard

feat (3)

This is an attempt to implement the feat application from the fsl fMRI package www.fmrib.ox.ac.uk/fsl/fsl/whatsnew.html into a Scufl workflow. Details are still being polished but the general structure is here. The main problem that we have with such workflows concerns data provenance. Each of the services is typically iterated on hundreds of data sets and keeping track of the produced files is a pain.

Created: 2008-03-18 | Last updated: 2008-05-19

Credits: Glatard

Taverna 1

Uploader

Glatard

feat FSL group analysis (1)

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This workflow is to be run on results obtained from this one (couldn't manage to find a clean solution for merging those two in Scufl). Processor "feat_group": 1. builds the experiment intput (design) file from template and input parameters 2. calls feat FSL Processor "roi" reads activation maps produced by feat_group, extract a region of interest and compute the mean, stdev, max and min activation within it. Here is a sample input in VBrowser's XML dialect. Below is...

Created: 2009-01-28 | Last updated: 2009-01-28

Credits: Glatard