retrieve nucleotide sequence and do a BLAST from DDBJ Web services

Created: 2010-09-01 17:31:29 Last updated: 2010-09-01 17:33:51

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informations on Web services available at http://xml.nig.ac.jp/index.html

example :

accession : AB000100
database : DDBJ
program : blastn

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Workflow Components

Inputs (3)

Name	Description
DDBJ_accession
biological_sequence_database
bioinformatics_program

Processors (2)

Name	Type	Description
getFASTA_DDBJEntry	arbitrarywsdl	Get DDBJ entry of FASTA Format by Accession Number
searchSimple	arbitrarywsdl	Execute Blast

Beanshells (0)

Outputs (1)

Name	Description
blast_report_ddbj

Links (5)

Source	Sink
DDBJ_accession	getFASTA_DDBJEntry:accession
searchSimple:Result	blast_report_ddbj
getFASTA_DDBJEntry:Result	searchSimple:query
biological_sequence_database	searchSimple:database
bioinformatics_program	searchSimple:program

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Taverna 1

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Lebreton

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Lebreton

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retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services

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1908 viewings

1645 downloads

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retrieve nucleotide sequence and do a BLAST from DDBJ Web services

Created by Lebreton on Wednesday 01 September 2010 17:31:29 (UTC)

Last edited by Lebreton on Wednesday 01 September 2010 17:33:51 (UTC)

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retrieve nucleotide sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html accession : AB000100 database : DDBJ program : blastn param : -b 5 -m 7

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton