retrieve nucleotide sequence and do a VecScreen from DDBJ Web services

Created: 2010-07-21 14:36:36 Last updated: 2010-09-01 17:35:20

Download Workflow

retrieve nucleotide sequence and do a VecScreen from DDBJ Web services : A system for quickly identifying segments of a nucleic acid sequence that may be of vector origin

informations on Web services available at http://xml.nig.ac.jp/index.html

accession : AB000100

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/1457/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
DDBJ_accession

Processors (2)

Name	Type	Description
getFASTA_DDBJEntry	arbitrarywsdl	Get DDBJ entry of FASTA Format by Accession Number
searchSimple	arbitrarywsdl	search

Beanshells (0)

Outputs (1)

Name	Description
vector_origin_prediction_report

Links (3)

Source	Sink
getFASTA_DDBJEntry:Result	searchSimple:query
DDBJ_accession	getFASTA_DDBJEntry:accession
searchSimple:Result	vector_origin_prediction_report

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Lebreton

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Lebreton

Information Attributions (0)

(Workflows/Files)

None

Information Tags (4)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1940 viewings

1749 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

retrieve nucleotide sequence and do a VecScreen from DDBJ Web services

Created by Lebreton on Wednesday 21 July 2010 14:36:36 (UTC)

Last edited by Lebreton on Wednesday 01 September 2010 17:35:20 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (10)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Lebreton

retrieve protein sequence and do a BLAST a... (1)

Download

retrieve protein sequence and do a BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: Lebreton

Attributions: BLAST using DDBJ service

Taverna 1

Uploader

Lebreton

retrieve protein sequence and do a high sp... (1)

Download

retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: Lebreton