retrieve nucleotide sequence and do a VecScreen from DDBJ Web services

Created: 2010-07-21 14:36:36 Last updated: 2010-09-01 17:35:20

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retrieve nucleotide sequence and do a VecScreen from DDBJ Web services : A system for quickly identifying segments of a nucleic acid sequence that may be of vector origin

informations on Web services available at http://xml.nig.ac.jp/index.html

accession : AB000100

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Workflow Components

Inputs (1)

Name	Description
DDBJ_accession

Processors (2)

Name	Type	Description
getFASTA_DDBJEntry	arbitrarywsdl	Get DDBJ entry of FASTA Format by Accession Number
searchSimple	arbitrarywsdl	search

Beanshells (0)

Outputs (1)

Name	Description
vector_origin_prediction_report

Links (3)

Source	Sink
getFASTA_DDBJEntry:Result	searchSimple:query
DDBJ_accession	getFASTA_DDBJEntry:accession
searchSimple:Result	vector_origin_prediction_report

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Taverna 1

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Lebreton

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Lebreton

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1940 viewings

1749 downloads

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retrieve nucleotide sequence and do a VecScreen from DDBJ Web services

Created by Lebreton on Wednesday 21 July 2010 14:36:36 (UTC)

Last edited by Lebreton on Wednesday 01 September 2010 17:35:20 (UTC)

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retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: Lebreton