retrieve nucleotide sequence and do a high speed BLAST and extract position from DDBJ Web services

Created: 2010-07-21 14:08:32 Last updated: 2010-09-07 10:04:55

Download Workflow

informations on Web services available at http://xml.nig.ac.jp/index.html

accession : AB000100
database : DDBJ
program : blastn
param : -b 5 -m 7

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/1455/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (4)

Name	Description
bioinformatics_program
sequence_database
bioinformatics_parameter
UniProt_accession

Processors (3)

Name	Type	Description
getFASTA_UNIPROTEntry	arbitrarywsdl	Get UNIPROT entry of FASTA Format by Accession Number
searchParallel	arbitrarywsdl	Auto generated from http://xml.nig.ac.jp/wsdl/Blast.wsdl
extractPosition	arbitrarywsdl	get position information from BLAST

Beanshells (0)

Outputs (1)

Name	Description
position_blast_report_ddbj

Links (7)

Source	Sink
getFASTA_UNIPROTEntry:Result	searchParallel:arg2
bioinformatics_program	searchParallel:arg0
sequence_database	searchParallel:arg1
bioinformatics_parameter	searchParallel:arg3
UniProt_accession	getFASTA_UNIPROTEntry:accession
searchParallel:Result	extractPosition:result
extractPosition:Result	position_blast_report_ddbj

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Lebreton

Information License

All versions of this Workflow are licensed under:

Information Version 1 (earliest) (of 4)

Information Credits (1)

(People/Groups)

Lebreton

Information Attributions (0)

(Workflows/Files)

None

Information Tags (5)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

3188 viewings

1838 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

retrieve nucleotide sequence and do a high speed BLAST and extract position from DDBJ Web services

Created by Lebreton on Wednesday 21 July 2010 14:08:32 (UTC)
workflowsemanticm

Created by Lebreton on Tuesday 07 September 2010 09:56:12 (UTC)

Last edited by Lebreton on Tuesday 07 September 2010 09:56:24 (UTC)
retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services

Created by Lebreton on Tuesday 07 September 2010 09:59:32 (UTC)

Last edited by Lebreton on Tuesday 07 September 2010 10:02:07 (UTC)
retrieve nucleotide sequence and do a high speed BLAST and extract position from DDBJ Web services

Created by Lebreton on Tuesday 07 September 2010 10:03:39 (UTC)

Last edited by Lebreton on Tuesday 07 September 2010 10:04:55 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (51)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Uploader

Lebreton

retrieve protein sequence and do a BLAST a... (1)

Download

retrieve protein sequence and do a BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: Lebreton

Attributions: BLAST using DDBJ service

Taverna 1

Uploader

Lebreton

retrieve nucleotide sequence and do a BLAS... (1)

Download

retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services