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Name: Aleksandra Pawlik

Joined: Friday 03 May 2013 10:39:38 (UTC)

Last seen: Friday 24 April 2015 14:21:58 (UTC)

Email (public): aleksandra.pawlik [at] manchester.ac.uk

Website: http://www.mygrid.org.uk

Location: Manchester, United Kingdom

2 Friends

6 Groups (admin)

2 Groups (member)

36 Files

1 Packs

6 Workflows

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Aleksandra Pawlik has been credited 35 times

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Interests:

Scientific Software development, best practices for software development, training

Field/Industry: Scientific Software

Occupation/Role(s): Instructor and Research Software Community Consultant

Organisation(s):

University of Manchester

 

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Exploring Taverna Engine - managing lists, looping, ...

Created: 2015-01-22 16:01:32

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Importing data from spreadsheets into Taverna workflows

Created: 2015-01-22 13:00:28

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Using REST services from Biocatalogue

Created: 2015-01-22 12:40:34 | Last updated: 2015-01-22 12:42:14

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Building simple workflow in Taverna

Created: 2015-01-22 12:38:13

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Short introduction to Taverna 2.5

Created: 2015-01-22 12:37:00

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to WebServices, Workflows and Taverna

Created: 2015-01-22 12:00:28 | Last updated: 2015-01-22 12:29:03

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Using R service in Taverna - Introduction

Created: 2014-01-22 13:29:52

Credits: User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to using R service in Taverna workflows.

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to building workflows with Taverna

Created: 2014-01-22 13:28:47

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to building workflows with Taverna for the Cranfield University course.

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Cranfield - Introduction to webservices and workflows

Created: 2014-01-22 13:27:41

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to workflows, web services and Taverna for the Cranfield University.

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Tutorial for Cranfield Course

Created: 2014-01-22 12:02:37

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Test Data for Rservice Tutorial-Biodiversity

Created: 2014-01-19 14:38:17

Credits: User Aleksandra Pawlik User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Test data for R service tutorial usage in Taverna.

File type: Excel workbook

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Taverna Workbench Tool Tutorial

Created: 2013-12-06 13:31:31 | Last updated: 2013-12-06 13:31:34

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 46 times | Downloaded: 45 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna Workbench

Created: 2013-12-05 10:37:24 | Last updated: 2013-12-05 10:55:47

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to Taverna Workbench - building workflows, using different data input formats, saving results, using Shim services.

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob RShell Tutorial for Taverna Workbench

Created: 2013-12-04 18:18:23

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

RShell Tutorial for Taverna Workbench - using Rshell service in workflows.

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Taverna Components Tutorial

Created: 2013-12-04 18:17:05

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Taverna Components Tutorial: creating and using components

File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 57 times | Downloaded: 58 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Taverna Workbench Engine Tutorial

Created: 2013-12-04 18:16:09

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Taverna Workbench Engine Tutorial: cross and dot product, iteration, looping and control links.

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Working with BioVel Portal

Created: 2013-12-04 15:20:31

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Uploading and running your workflows in the BioVel Portal - tutorial.

File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob RShell Exercise for the BioVel Workshop

Created: 2013-12-04 15:18:47 | Last updated: 2013-12-04 15:19:27

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Exercise to practice using RShell Service.

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Spreadsheet file with data for the species workflow

Created: 2013-12-04 12:09:18 | Last updated: 2013-12-04 12:16:25

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A sample spreadsheet file including species names to be used as input file for the Introduction to the Taverna Workbench tutorial.

File type: Excel workbook

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to myExperiment

Created: 2013-12-03 23:51:21 | Last updated: 2013-12-04 12:29:24

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to myExperiment - short tutorial.

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob XPath service Tutorial

Created: 2013-12-03 22:49:13 | Last updated: 2013-12-03 23:22:57

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Spreadsheet file with data for the species workflow ...

Created: 2013-11-28 19:47:35 | Last updated: 2013-12-05 13:56:23

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Second spreadsheet file to be used for the Introduction to Taverna Workbench tutorial.

File type: Excel workbook

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Data file for workflow retrieving species occurrence

Created: 2013-11-28 19:20:04 | Last updated: 2013-12-04 16:24:05

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Second data text file to be used for the Introduction to Taverna Workflows tutorial.

File type: Plain text

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Data file for workflow retrieving species occurrence

Created: 2013-11-28 17:28:19 | Last updated: 2013-12-04 16:24:20

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The second sample data file to be used for the Introduction to Taverna Workbench tutorial.

File type: Plain text

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna Online & Interaction

Created: 2013-09-06 09:04:41

Credits: User Aleksandra Pawlik User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an introductory tutorial for Taverna Online and Interaction service. To be used for the workshop at Bonn University 4-6 September 2013

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna Components - Bonn 2013

Created: 2013-09-06 07:39:49

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an introductory tutorial about Taverna Components to be used for the workshop at Bonn University 4-6 September 2013. Please note that as components are still under development some details presented in this tutorial may change in the future.

File type: PowerPoint 2007 presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob XPath service Tutorial

Created: 2013-09-05 12:26:15

Credits: User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

XPath Service tutorial to be used for the workshop at Bonn University, 4-6 September 2013

File type: PowerPoint presentation

Comments: 0 | Viewed: 53 times | Downloaded: 44 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob REST Service Tutorial

Created: 2013-09-05 12:12:56

Credits: User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

REST Services Tutorial to be used for the workshop at Bonn University 2013

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Shims and Beanshells - tutorial

Created: 2013-09-05 09:49:45

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Shims and Beanshell - introductory tutorial for the workshop at Bonn University 2013

File type: PowerPoint presentation

Comments: 0 | Viewed: 41 times | Downloaded: 36 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob RShell tutorial

Created: 2013-09-05 09:46:43

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

RShell Tutorial by Peter Li - to be used for the workshop at Bonn University, 4-6 September 2013

File type: PowerPoint presentation

Comments: 0 | Viewed: 50 times | Downloaded: 47 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna -part2 - Bonn 2013

Created: 2013-09-03 22:28:51

Credits: User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to Taverna workflows: myExperiment, nested workflows, Spreadsheet import, BioMart, exploring workflow engine. This is a tutorial for the workshop at Bonn University 4-6 September 2013

File type: PowerPoint presentation

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Introduction to Taverna - Bonn 2013

Created: 2013-09-03 20:22:55

Credits: User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to building workflows with Taverna - tutorial for the workshop at Bonn University, 4-6 September 2013

File type: PowerPoint presentation

Comments: 0 | Viewed: 57 times | Downloaded: 60 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Test Data for Rservice Tutorial

Created: 2013-09-02 18:24:22 | Last updated: 2013-11-27 15:25:50

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: text/csv

Comments: 0 | Viewed: 44 times | Downloaded: 41 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob Nested UnigeneID_to_KEGG in Import and Convert

Created: 2013-08-29 14:09:53

Credits: User Katy Wolstencroft User Alan Williams User Paul Fisher

Attributions: Workflow UnigeneID to KEGG Pathways

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an example of a nested workflow, created for the training purposes.

File type: Trident (Package)

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob GalaxyGeneList - long : datafile for training

Created: 2013-08-29 10:25:07

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Chip-Seq gene list example used for training purposes. This is the original version of the file  (approx 400 entries). Warning! Running this file in some workflows may  take up to 30 minutes! If you want to use it for training, you may want to reconsider and use the shorter version of the file which is also uploaded.

File type: Excel workbook

Comments: 0 | Viewed: 30 times | Downloaded: 16 times

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4059?size=60x60 Gb Aleksandra Pawlik
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Blob GalaxyGeneList - short : datafile for training

Created: 2013-08-29 10:20:47 | Last updated: 2013-08-29 10:22:02

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Chip-Seq gene list example used for training purposes. This is a shorter version of the file (20 entries) as running the original file (the longer one with approx 400 entries) takes up to 30 minutes.

File type: Excel workbook

Comments: 0 | Viewed: 53 times | Downloaded: 95 times

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