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2602?size=60x60 Es Jose Enrique Ruiz
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Blob Sample VOTable from SDSS DR7 Catalog II/294 in Vizier

Created: 2013-04-12 16:21:10

Credits: User Jose Enrique Ruiz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This VOTable is used in workflow snippets provided in AstroTaverna starter pack

File type: Trident (Package)

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2602?size=60x60 Es Jose Enrique Ruiz
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Blob Sample VOTable from 2MASS Catalog

Created: 2013-04-12 16:16:40

Credits: User Jose Enrique Ruiz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This VOTable is used in workflow snippets provided in AstroTaverna starter pack

File type: Trident (Package)

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4450?size=60x60 In Drkrish...
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Blob SILDENAFIL CITRATE (Viagra) IN ITS POLYMORPHIC FORMS

Created: 2013-04-08 05:17:04

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 AN IMPROVED PROCESS FOR THE PREPARATION OF SILDENAFIL CITRATE (Viagra) IN ITS POLYMORPHIC FORM The present invention provides an improved process for preparation of 1-[[3-(6,7-dihydro-1-methyl-7-oxo-3-propyl-1H –pyrazolo[4,3-d]pyrimidin-5-yl)-4-ethoxyphenyl]sulphonyl]-4methypiperazine citrate (Sildenafil Citrate) ofPolymorphic form I)

File type: Adobe PDF

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9?size=60x60 Gb Stian Soiland-Reyes
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Blob Workflow run: Pav2Svg using ChemSpider VoID

Created: 2013-04-05 09:28:31

Credits: User Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Taverna provenance of workflow run on PAV2SVG using the ChemSpider VoID descriptor as input. See Pack 418.

File type: ZIP archive

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9?size=60x60 Gb Stian Soiland-Reyes
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Blob Visualization of ChemSpider VoiD provenance

Created: 2013-04-05 09:23:22 | Last updated: 2013-04-05 10:40:18

Credits: User Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

SVG visualization of the PAV provenance from the ChemSpider VoID descriptor example. See Pack 418.Note that this file has been made with PROV Toolbox 0.1.2 as 0.1.3 does not show shortened labels as here.

File type: image/svg+xml

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1780?size=60x60 Gb Donal Fellows
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Blob Characterisation Component

Created: 2013-04-04 12:37:26 | Last updated: 2014-04-01 10:57:41

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A SCAPE component for characterisation

File type: Taverna Component Profile

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1780?size=60x60 Gb Donal Fellows
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Blob Migration Action Component

Created: 2013-04-04 10:44:50 | Last updated: 2014-04-01 10:52:53

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A SCAPE component for migration actions

File type: Taverna Component Profile

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9?size=60x60 Gb Stian Soiland-Reyes
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Blob adfsadf

Created: 2013-01-30 14:15:24

Credits: User Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 asdf

File type: Trident (Package)

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30?size=60x60 Nl Marco Roos
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Blob The Hypothesis for the wf4ever Demo Pack 2013

Created: 2013-01-30 14:06:43 | Last updated: 2013-01-30 14:07:25

Credits: User Marco Roos

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The hypothesis for the Demo pack created for the wf4ever demo in 2013. It is not intended for real use.

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71?size=60x60 Nl Katy Wolstencroft
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Blob Cranfield Msc Intro to Taverna

Created: 2013-01-09 16:43:00

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial give a brief introduction to designing and running workflows in Taverna, using a variety of different types of services and reusing workflows from myExperiment

File type: PowerPoint presentation

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3232?size=60x60 Tn kmezhoud
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Blob Interactive Proteomics Data Enrishment Tutorial

Created: 2013-01-09 10:48:37

Credits: User kmezhoud

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial describes the main steps used to construct an enriched network from a list of genes with their expression values. The network includes the fold change, the False discovery rate (FDR), the gene expression correlation, the most often involved biological processes, and the most likely corresponding diseases. All the main steps are illustrated by screen shots. The “Tools & Data” section lists all the tools and data required. The “Data computing” s...

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2602?size=60x60 Es Jose Enrique Ruiz
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Blob Calculation of Luminosity Profiles for a Sample of G...

Created: 2013-01-05 16:57:08

Credits: User Jose Enrique Ruiz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document describes the "Luminosity Profiles" Research Object

File type: Adobe PDF

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2602?size=60x60 Es Jose Enrique Ruiz
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Blob Extraction of Properties from a Sample of Galaxies

Created: 2013-01-05 16:54:48 | Last updated: 2013-01-05 16:57:46

Credits: User Jose Enrique Ruiz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document describes the "Galaxies Sample Selection" Research Object

File type: Adobe PDF

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2602?size=60x60 Es Jose Enrique Ruiz
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Blob D5.3v2 Calculation of Luminosity Profiles for a Samp...

Created: 2013-01-05 16:45:48 | Last updated: 2013-01-05 16:48:45

Credits: User Jose Enrique Ruiz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document describes the development of the second Golden Exemplar proposed in Work Package 5: Workflow Astronomy Preservation, and provides discussion about user-driven issues risen in this process and related with general objectives of the Wf4Ever project. The document pertains to the assembly of two Research Objects (RO) packing the digital experiment undertaken for the extraction of a sample of galaxies based on environmental criteria and the calculation of luminosi...

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3377?size=60x60 Gb Jon Giddy
Project Biovel
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Blob Matrix Population Modelling documentation

Created: 2012-11-05 16:32:34 | Last updated: 2012-11-07 09:01:58

Credits: User Jon Giddy User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document describes the Matrix Population Modelling workflow, and includes a tutorial on its use.

File type: Adobe PDF

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Demographic data Gentiana pneumonanthe 1987-1988 fro...

Created: 2012-11-05 09:47:37 | Last updated: 2013-08-13 12:06:34

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

Attributions: Workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Workflow Matrix Population Model construction and analysis v20

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of one year demographic data of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population (http://www.myexperiment.org/workflows/3276.html) or Matrix Population Model construction and analysi...

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Avatar Cherian Mathew
Project Biovel
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Blob Data Refinement Workflow Documentaion

Created: 2012-11-02 17:42:05 | Last updated: 2012-11-07 08:47:24

Credits: User Cherian Mathew

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This document provides comprehensive information about the Data Refinement Workflow.

File type: Adobe PDF

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Avatar Cherian Mathew
Project Biovel
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Blob Sample Input for Data Refinement Workflow

Created: 2012-11-02 16:10:54 | Last updated: 2012-11-07 08:48:11

Credits: User Cherian Mathew

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This file is a sample input file for the Data Refinement Workflow. It is also the input file used in the tutorial section of the documentation.

File type: Plain text

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Demographic data Gentiana pneumonanthe 1987-1991 fr...

Created: 2012-11-02 12:37:19 | Last updated: 2014-07-04 12:31:17

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

Attributions: Workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Workflow Matrix Population Model construction and analysis v20

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

This is a .txt file of four years demographic data of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population (http://www.myexperiment.org/workflows/3276.html) or Matrix Population Model construction and analysis v...

File type: Plain text

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3377?size=60x60 Gb Jon Giddy
Project Biovel
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Blob Demographic data Gentiana pneumonanthe 1987-1988 fro...

Created: 2012-11-02 10:59:24 | Last updated: 2012-11-07 08:56:00

Credits: User Jon Giddy User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Small example file to allow users to run population modelling workflow  

File type: Plain text

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3400?size=60x60 Gb Khalid Belhajjame
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Blob Semantic Annotation of Web Services (Feta)

Created: 2012-10-26 09:45:01

Credits: User Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the semantic annotations of web services using Feta.

File type: ZIP archive

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3424?size=60x60 De jhermes
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Blob Governmental Statements (Merkel)

Created: 2012-09-19 14:50:30

Credits: User jhermes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A corpus of all governmental statements from chancellor Merkel.

File type: ZIP archive

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Avatar Adamhen...
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Blob family tree

Created: 2012-09-17 21:49:40

Credits: User Adamhenshall

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 attempt at mapping levels of Pearl Ogden's family tree.

File type: Trident (Package)

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3489?size=60x60 Gb Helen Hulme
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Blob Agenda of Bonn tutorial

Created: 2012-09-14 09:51:22

Credits: User Helen Hulme User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the list of presentations and workshop items from the Bonn tutorial 2012. The presentations (and many of the workflows and datafiles) for this are in the pack: "Pack for Bonn2012" http://www.myexperiment.org/packs/330

File type: Word document

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3489?size=60x60 Gb Helen Hulme
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Blob Assignment Data - suggested SNPs

Created: 2012-09-05 07:20:29 | Last updated: 2012-09-05 07:22:16

Credits: User Helen Hulme

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 Here are some SNPs you can use for the assignment on day 3 of the Bonn 2012 Taverna course. The assignment is about SNP annotation and analysis If you would prefer to use some others that you are working with, fine. This data is a column of dbSNP identifiers  

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3489?size=60x60 Gb Helen Hulme
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Blob Bonn Taverna Presentation - Case Studies

Created: 2012-09-04 10:17:41 | Last updated: 2012-09-04 13:45:55

Credits: User Helen Hulme User Katy Wolstencroft User Paul Fisher User Shoaib Sufi User Mcornell User Robert Haines

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 Presentation comparing and contrasting Taverna workbench use on two case studies: 1. African Sleeping Sickness (Trypanosomiasis) Wellcome Trust Project 2. NHS / TSB SNP annotation pipeline

File type: PowerPoint 2007 presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Bonn Tutorial REST services

Created: 2012-09-03 19:34:12

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a brief introduction to using REST servicces through Taverna

File type: PowerPoint presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Bonn Tutorial Different Service Types

Created: 2012-09-03 19:32:32

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thie tutorial introduces you to using different types of services with Taverna - e.g. asynchronous, biomart and soaplab

File type: PowerPoint presentation

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3655?size=60x60 Nl Magnus Palmblad
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Blob rt3.c

Created: 2012-09-03 10:36:54 | Last updated: 2012-09-03 10:42:13

Credits: User Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Linear retention time prediction training rt, version 3.0 with improved command-line interface and format options.

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71?size=60x60 Nl Katy Wolstencroft
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Blob Bonn Taverna Shims

Created: 2012-08-30 14:18:06

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to finding, using and designing Shim services for Taverna workflows

File type: PowerPoint presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Bonn Taverna WF Engine

Created: 2012-08-30 14:15:51

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to using the advanced features of the Taverna workflow engine, such as iterations, looping etc

File type: PowerPoint presentation

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71?size=60x60 Nl Katy Wolstencroft
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Blob Bonn Taverna Intro Tutorial

Created: 2012-08-30 14:11:55

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial provides an introduction to designing, combining and sharing workflows with Taverna and myExperiment

File type: PowerPoint presentation

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1253?size=60x60 Gb Anja Le Blanc
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Blob HELIO Service List for Taverna 2.4

Created: 2012-08-30 09:45:06

Credits: User Anja Le Blanc

License: BSD License

Import HELIO SOAP web services from this file. This works for Taverna 2.4. Pervious service lists cause problems while importing them.

File type: XML

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71?size=60x60 Nl Katy Wolstencroft
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Blob Bozeman Tutorial

Created: 2012-08-22 09:59:37

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to designing and using Taverna workflows and myExperiment. It was created for the workshop "Making Sense of Biological Systems:Using Knowledge Mining to Improve and Validate Models of Living Systems", at Montana State University Aug 2012

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Blob STUDY OF QUANTIFICATION OF IMPURITIES AND RELATED SU...

Created: 2012-08-13 16:46:39

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

    Bulk drug during its production process, after its scale up, it is necessary to analyse for the presence of any impurities or related substances in it. This is to ensure the impurities and related substances are within their limits as per ICH Guidelines. The impurities and related substances are defined as; Impurity: Any component present in the drug substance or drug product which is not the desired product, a product-related substance, or excipient including buffer com...

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3400?size=60x60 Gb Khalid Belhajjame
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Blob Execution traces copied from the vistrails console ...

Created: 2012-08-06 11:00:38

Credits: User Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

  This is the execution trace as it appeared in the Vistrailsworkbench of the workflow that retrieves the pathways associated with given kegg gene identifier.

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3400?size=60x60 Gb Khalid Belhajjame
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Blob Provenance traces of the Gene To Pathway Taverna Wor...

Created: 2012-08-06 10:58:38

Credits: User Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

  This is the provenance trace in Janus of the Tavrerna workflow that retrieves the pathways associated with given kegg gene identifier.

File type: RDF data

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3400?size=60x60 Gb Khalid Belhajjame
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Blob Provenance traces of the Gene To Pathway Taverna Wor...

Created: 2012-08-06 10:57:37

Credits: User Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is the provenance trace in provo of the Tavrerna workflow that retrieves the pathways associated with given kegg gene identifier.

File type: ZIP archive

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3813?size=60x60 Program...
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Blob Combined workflow from my master work

Created: 2012-08-03 11:13:35

Credits: User Programmerva

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Here is two workflows is combined to one workflow. One part of this workflows is taken from MyExperiment.

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Avatar Cherian Mathew
Project Biovel
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Blob Data Refinement Workflow Utility Jar (Current Version)

Created: 2012-07-26 14:56:42 | Last updated: 2012-11-07 08:48:49

Credits: User Cherian Mathew

License: Creative Commons Attribution-Share Alike 3.0 Unported License

   jar which includes all utility classes with functionality used in the Data Refeinement workflow

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Blob Process for the preparation of amorphous atorvastati...

Created: 2012-07-24 12:07:03

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Atorvastatin calcium is a drug compound that is used as a lipid-lowering agent, fortreating hypercholesterolemia. The compound has the chemical name[R-(R*,R*)]-2-(4-fluorophenyl)-3,ö-dihydroxy-5-(1-methylethyl)-3-phenyl-4-{(phenylamino)carbonyl}-1H-pyrolle-1-hepatonic acid, calcium salt (2:1) trihydrate. Pharmaceutical productscontaining crystalline atorvastatin calcium trihydrate are sold using the trademarkLIPITOR.

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Blob Novel polymorph of 5-cyanopthalide high purity inter...

Created: 2012-07-24 12:02:16

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The present invention relates to obtaining a new polymorph of 5-Cyanophthalide in highly pure form (99.5 to 99.99%), which is an intermediate used forthe synthesis of citalopram& escitalopram both of which are potent antidepressant drugs.Moreover this new polymorph of 5-cyanophthalide does not contain impurities liketerephthalic acid & diphthalide derivatives.        

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Blob Enantioselective method of synthesizing methylphenid...

Created: 2012-07-24 11:51:52

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Process for the preparation of enantioselective method of making methylphenidate and derivatives . The method involves use of a rhodium catalyst, and selectively produces the D-enantiomer of the methylphenidate derivative in excess of the L-enantiomer . Furthermore, the method selectively produces the threo-diastereomer in excess of the erythro-diastereomer. The method is thus suitable for synthesis of D-threo-methylphenidate (the biologically active form of this compound) and derivatives &...

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Blob Quality Assurance and GMP and ICH

Created: 2012-07-24 11:46:03

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Quality Assurance is a planned and systematic approach to generate enough confidence in the quality of the product and processes in the long run as per the specifications." In this biog you will find post related to ICH, GMP and Quality related matters.

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Blob GLIBENCLAMIDE Complexes ( Complexes of Mg,Cr,Ni,Zn a...

Created: 2012-07-24 11:33:50 | Last updated: 2012-07-24 11:33:51

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The N-acetyl derivative of β-phenethylamine is reacted with chlorosulfonic acid to form the para sulfonyl chloride derivative. This is then subjected to ammonolysis, followed by base-catalyzed removal of the acetamide. This is then acylated with 2-methoxy-5-chlorobenzoic acid chloride to give the amide intermediate. This is then reacted with cyclohexyl isocyanate to yield the sulfonylurea glibenclamide

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Blob HOW TO START ANALYTICAL METHOD DEVELOPMENT

Created: 2012-07-24 11:28:31

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 A bulk drug during its production process, after its scale up, it is necessary to analyse for the presence of any impurities or related substances in it. This is to ensure the impurities and related substances are within their limits as per ICH Guidelines.The impurities and related substances are defined as; Impurity: Any component present in the drug substance or drug product which is not the desired product, a product-related substance, or excipient including buffer components. I...

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Blob DEFINITION “IMPURITY”

Created: 2012-07-24 11:18:54

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Impurities are normally generated during the formation of Active PharmaceuticalIngredients and their intermediates. Chances of their generation during Drug Productsformation are less as formulation is a physical blending process. Care is taken that theseexcipients do not react with each other to produce the degradants. They may consist oforganic and inorganic, and define levels at which impurities/degradants should beidentified.ICH Q3A covers drug substances and Q3B covers drug products. Th...

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Blob Improved process for preparing L-phenylephrine hydro...

Created: 2012-07-24 11:12:15

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The present invention relates to an improved process for preparing L-phenylephrinehydrochloride on an industrial scale    

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Blob PROCESS FOR PREPARATIN OF VITAMIN-C-Dr.krishnasarma ...

Created: 2012-07-24 11:03:13

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Ascorbic acid (vitamin C) is a water-soluble vitamin. It occurs as a white or slightly yellowcrystal or powder with a slight acidic taste. It is an antiscorbutic product. On exposure to light, itgradually darkens. In the dry state, it is reasonably stable in air, but in solution it rapidlyoxidizes. Ascorbic acid (vitamin c) is freely soluble in water; sparingly soluble in alcohol;insoluble in chloroform, in ether, and in benzene. The chemical name of ascorbic acid (vitaminc) is L-ascorbic a...

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Blob Industrial process for preparation of Levetiracetam....

Created: 2012-07-24 10:59:51

Credits: User Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

         Levetiracetam belongs to the class of compounds used in the treatment of epilepsy so it.has huge demand in market and it is worth to develop the product.

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