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Visualization of ChemSpider VoiD provenance

Created: 2013-04-05 09:23:22 | Last updated: 2013-04-05 10:40:18

Credits: Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: image/svg+xml

Comments: 0 | Viewed: 57 times | Downloaded: 20 times

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Visualize PAV provenance as SVG

Created: 2013-04-05 09:18:51 | Last updated: 2018-01-04 11:39:09

11 items in this pack

Comments: 0 | Viewed: 103 times | Downloaded: 19 times

GeneIlluminator_GetGraph (2)

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Example workflow demonstrating how to use GeneIlluminator_GetGraph, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, a graphical overview of the clusters and gene symbols is created in SVG format and returned to ...

Created: 2008-02-27 | Last updated: 2008-03-03

Credits: Pieter Neerincx Alako

Voronoi polygon generation using GRASS-GIS... (1)

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Generic example on how to deal with vectorial data. Major pitfall is the need to process ProcessOutputs using Xpath plugin. A random point file in GML 2.1.2 is sent to the v.voronoi service and after it is sent to a service that runs v.out.svg generating a SVG image that can be rendered in Taverna (need to set output to SVG image)

Created: 2011-04-27 | Last updated: 2011-04-27

Credits: Jorgejesus

Convert GML to SVG (1)

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This workflow can convert the GML (Geography Markup Language) file to SVG image.

Created: 2011-08-31 | Last updated: 2011-08-31

Credits: Harvey

Visualize PAV provenance as SVG (2)

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VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance. Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 wit...

Created: 2013-03-05 | Last updated: 2013-04-05

Credits: Stian Soiland-Reyes