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411?size=60x60 Gb Dfmac
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Blob JISC eRoadshow at Kings, London

Created: 2009-01-14 10:23:32 | Last updated: 2009-01-14 10:24:05

Credits: User Dfmac

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 JISC eRoadshow at Kings, London

File type: Adobe PDF

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345?size=60x60 Nl Wassinki
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Blob Results of the Mapping oligonucleotides to an assembly

Created: 2008-12-19 09:53:23

Credits: User Wassinki

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This zip file contains the results of the complete input set analysed by the "Mapping oligonucleotides to an assembly" workflow.

File type: ZIP archive

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Avatar Felicity
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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:20:35 | Last updated: 2008-12-01 07:11:27

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 3. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%203

File type: ZIP archive

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Avatar Felicity
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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:18:47 | Last updated: 2008-12-01 07:12:41

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 2. The mashup can be viewed at: http://www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%202

File type: ZIP archive

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Avatar Felicity
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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:17:41 | Last updated: 2008-12-01 07:13:40

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 1. The mashup can be viewed at: http://www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%201

File type: ZIP archive

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Avatar Felicity
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Blob Popfly Blocks for Protein Prediction Mashup 2

Created: 2008-11-27 10:15:10 | Last updated: 2008-12-01 07:16:18

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Prediction Mashup 2. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Prediction%20Mashup%201

File type: ZIP archive

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Avatar Felicity
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Blob Popfly Blocks for Protein Prediction Mashup 1

Created: 2008-11-27 10:13:29 | Last updated: 2008-12-01 07:15:28

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Prediction Mashup 1. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Prediction%20Mashup%201  

File type: ZIP archive

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Avatar Felicity
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Blob Popfly Blocks for Protein Characteristics Mashup 1

Created: 2008-11-27 10:11:14 | Last updated: 2008-12-01 07:14:32

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics Mashup 1. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Characteristics%20Mashup%201  

File type: ZIP archive

Comments: 0 | Viewed: 74 times | Downloaded: 47 times

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Avatar Felicity
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Blob Protein Analysis Popfly Blocks

Created: 2008-11-27 10:03:04 | Last updated: 2008-12-01 07:17:33

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A zip file containing Popfly blocks for protein analysis. It also includes a file explaining the function of each block as well as a list of mashups in which these blocks have been used.

File type: ZIP archive

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490?size=60x60 It Giovanni Dall'Olio
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Blob myExperiment experimental plugin for ubiquity

Created: 2008-10-25 17:34:40 | Last updated: 2008-10-25 18:36:05

Credits: User Giovanni Dall'Olio

License: Creative Commons Attribution-Share Alike 3.0 Unported License

NOTE: sorry, there is an error in the plugin :(. Open the js file and substitute 'splicing' with {QUERY}.  Ubiquity is a firefox experimental extension from mozilla labs, with the goal of giving you a new and quicker experience of the web. You can find a better description here: - http://labs.mozilla.com/projects/ubiquity/ And I recommend you this video: - ubiquity video Here it is an experimental search plugin for myExperiment. Have a look at it, and tell me if you have ideas to i...

File type: JavaScript

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480?size=60x60 Za Suza Adam
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Blob LIFEsparks biotechnology network

Created: 2008-10-19 11:05:10 | Last updated: 2008-10-19 11:12:58

Credits: User Suza Adam

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The LIFEsparks biopartnering social forum aims to boost the commercial success of Southern African initiatives and start-up companies focused the life sciences sector (biotechnology and medical devices), vis-a-vis allowing participants to share ideas, knowledge and to present their business and or investment opportunities to potential partners and funders.

File type: JPEG image

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97?size=60x60 Be Antoon Goderis
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Blob User survey report

Created: 2008-10-10 09:44:52

Credits: User Antoon Goderis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Summary report of user survey on workflow sharing, re-use, and discovery

File type: Adobe PDF

Comments: 0 | Viewed: 50 times | Downloaded: 47 times

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97?size=60x60 Be Antoon Goderis
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Blob CA 24 exercises

Created: 2008-10-09 14:39:01

Credits: User Antoon Goderis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

PowerPoint file containg 12 workflow re-use and discovery exercises, as part of CA24.

File type: PowerPoint presentation

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97?size=60x60 Be Antoon Goderis
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Blob CA24 assessments

Created: 2008-10-09 14:29:36 | Last updated: 2008-10-09 14:30:30

Credits: User Antoon Goderis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Excel file with assessments made by 24 participants as part of CA24. See exercise materials to understand the columns or contact goderisa@cs.man.ac.uk.

File type: Excel workbook

Comments: 0 | Viewed: 82 times | Downloaded: 36 times

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1217?size=60x60 Gb Alan Williams
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Blob Example SwissProt Data

Created: 2008-09-25 15:09:03

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Example SwissProt data to be used for Taverna examples.

File type: Plain text

Comments: 0 | Viewed: 78 times | Downloaded: 60 times

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1217?size=60x60 Gb Alan Williams
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Blob Example Genbank data

Created: 2008-09-25 15:00:28

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Example file containing GenBank data so that it can be used for example Taverna workflows

File type: Plain text

Comments: 0 | Viewed: 75 times | Downloaded: 69 times

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Avatar Jiro
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Blob Genbank Cross Reference Blocks

Created: 2008-08-18 03:36:47 | Last updated: 2008-08-18 03:41:55

Credits: User Jiro

License: Creative Commons Attribution 3.0 Unported License

Popfly blocks used in the UniProt to Genbank cross reference mashup. The first block in this mashup is the User Input block from Microsoft, which is not included here.

File type: ZIP archive

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Avatar Jiro
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Blob Article List Viewer Blocks

Created: 2008-08-18 03:29:20 | Last updated: 2008-08-18 03:53:39

Credits: User Jiro

License: Creative Commons Attribution 3.0 Unported License

Popfly Blocks used in the Article List Viewer Mashup

File type: ZIP archive

Comments: 0 | Viewed: 43 times | Downloaded: 30 times

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Avatar Us Yiming Sun
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Blob A Test of myExperiment's file uploading

Created: 2008-08-06 18:22:53

Credits: User Yiming Sun

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is very neat.  Bold, Italics, Underlined, and Strikethru  

File type: Plain text

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Avatar Woloski
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Blob SaaS Taxonomy

Created: 2008-07-16 03:17:43

Credits: User Woloski

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is an attempt to describe Software as a Service Taxonomy within different spheres

File type: GIF image

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258?size=60x60 Kwon, Jekeun
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Blob sample

Created: 2007-11-15 04:25:53

Credits: User Kwon, Jekeun

License: Creative Commons Attribution-Share Alike 3.0 Unported License

sample

File type: Progressive JPEG image

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4607?size=60x60 Gr George Kargas
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Blob Meme parser

Created: 2024-12-18 01:11:45 | Last updated: 2025-01-27 08:10:31

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This R script is designed to parse and process MEME motif analysis output files from a directory containing results for different sequence orientations (convergent, divergent, and same) in the context of small open reading frames (sORFs). The script loads necessary libraries, defines functions to parse individual MEME output files (parse_meme_output) and process directories containing these files (process_meme_results). It extracts key information such as motif patterns, widths, number of sit...

File type: Trident (Package)

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4607?size=60x60 Gr George Kargas
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Blob Batch Predict_Property Analysis for Protein Sequences

Created: 2024-12-17 12:29:43

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This Python script automates the execution of Predict_Property, a tool for analyzing specific properties of protein sequences, on multiple FASTA input files. Predict_Property can be downloaded from this github repository https://github.com/realbigws/Predict_Property. The script is tailored for batch processing of large datasets, ensuring efficient execution and organized output management.

File type: text/x-python

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4607?size=60x60 Gr George Kargas
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Blob Batch Phobius Analysis for Protein Sequences

Created: 2024-12-17 12:26:51

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This Python script automates the process of running Phobius, a tool for predicting signal peptides and transmembrane (TM) domains in protein sequences, on multiple input FASTA files. The script is particularly useful for large-scale bioinformatics projects where analyzing numerous protein datasets is required.

File type: text/x-python

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4607?size=60x60 Gr George Kargas
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Blob BLASTP Analysis Pipeline Script

Created: 2024-12-17 12:23:59 | Last updated: 2024-12-17 12:32:28

Credits: User George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This script processes multiple protein FASTA (.faa) files through BLASTP, comparing them against a specified BLAST database (like nr) to identify species-specific genes.

File type: text/x-python

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